| Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes DE Neafsey, RM Waterhouse, MR Abai, SS Aganezov, MA Alekseyev, ... Science 347 (6217), 2015 | 482 | 2015 |
| Major impacts of widespread structural variation on gene expression and crop improvement in tomato M Alonge, X Wang, M Benoit, S Soyk, L Pereira, L Zhang, H Suresh, ... Cell 182 (1), 145-161. e23, 2020 | 175 | 2020 |
| Reconstruction of ancestral genomes in presence of gene gain and loss P Avdeyev, S Jiang, S Aganezov, F Hu, MA Alekseyev Journal of Computational Biology 23 (3), 150-164, 2016 | 54 | 2016 |
| The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... bioRxiv, 2021 | 49 | 2021 |
| Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing S Aganezov, S Goodwin, RM Sherman, FJ Sedlazeck, G Arun, S Bhatia, ... Genome research 30 (9), 1258-1273, 2020 | 25 | 2020 |
| Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies RM Waterhouse, S Aganezov, Y Anselmetti, J Lee, L Ruzzante, ... BMC Biology 18 (1), 1, 2020 | 22 | 2020 |
| Scaffold assembly based on genome rearrangement analysis S Aganezov, N Sitdykova, MA Alekseyev, AGC Consortium Computational biology and chemistry 57, 46-53, 2015 | 20 | 2015 |
| A diploid assembly-based benchmark for variants in the major histocompatibility complex CS Chin, J Wagner, Q Zeng, E Garrison, S Garg, A Fungtammasan, ... Nature communications 11 (1), 1-9, 2020 | 19 | 2020 |
| Benchmarking challenging small variants with linked and long reads J Wagner, ND Olson, L Harris, Z Khan, J Farek, M Mahmoud, A Stankovic, ... BioRxiv, 2020 | 16 | 2020 |
| CAMSA: a tool for comparative analysis and merging of scaffold assemblies SS Aganezov, MA Alekseyev BMC bioinformatics 18 (15), 41-50, 2017 | 11 | 2017 |
| Multi-genome scaffold co-assembly based on the analysis of gene orders and genomic repeats S Aganezov, MA Alekseyev International Symposium on Bioinformatics Research and Applications, 237-249, 2016 | 11 | 2016 |
| Reconstruction of clone-and haplotype-specific cancer genome karyotypes from bulk tumor samples S Aganezov, BJ Raphael Genome research 30 (9), 1274-1290, 2020 | 9 | 2020 |
| Complete genomic and epigenetic maps of human centromeres N Altemose, GA Logsdon, AV Bzikadze, P Sidhwani, SA Langley, ... bioRxiv, 2021 | 7 | 2021 |
| On pairwise distances and median score of three genomes under DCJ S Aganezov, MA Alekseyev BMC bioinformatics 13 (19), 1-7, 2012 | 6 | 2012 |
| Recovering rearranged cancer chromosomes from karyotype graphs S Aganezov, I Zban, V Aksenov, N Alexeev, MC Schatz BMC bioinformatics 20 (20), 1-11, 2019 | 4 | 2019 |
| Optimized sample selection for cost-efficient long-read population sequencing TR Ranallo-Benavidez, Z Lemmon, S Soyk, S Aganezov, WJ Salerno, ... Genome Research 31 (5), 910-918, 2021 | 3 | 2021 |
| Transcriptome sequencing based annotation and homologous evidence based scaffolding of Anguilla japonica draft genome YC Liu, SD Hsu, CH Chou, WY Huang, YH Chen, CY Liu, GJ Lyu, ... BMC genomics 17 (1), 177-192, 2016 | 3 | 2016 |
| The human origin recognition complex is essential for pre-RC assembly, mitosis, and maintenance of nuclear structure HC Chou, K Bhalla, OEL Demerdesh, O Klingbeil, K Hanington, ... Elife 10, e61797, 2021 | 2 | 2021 |
| Orientation of Ordered Scaffolds S Aganezov, MA Alekseyev RECOMB International Workshop on Comparative Genomics, 179-196, 2017 | 2 | 2017 |
| Automated assembly scaffolding elevates a new tomato system for high-throughput genome editing M Alonge, L Lebeigle, M Kirsche, S Aganezov, X Wang, Z Lippman, ... BioRxiv, 2021 | 1 | 2021 |
Max A. AlekseyevGeorge Washington UniversityVerified email at gwu.edu
