| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 13207 | 2019 |
| Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking MX Wang, JJ Carver, VV Phelan, LM Sanchez, N Garg, Y Peng, ... Nature Biotechnology 34, 828–837 (2016) doi:10.1038/nbt.3597 34, 828-837, 2016 | 3217 | 2016 |
| QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018 | 966 | 2018 |
| Feature-based molecular networking in the GNPS analysis environment LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ... Nature methods 17 (9), 905-908, 2020 | 793 | 2020 |
| Reproducible molecular networking of untargeted mass spectrometry data using GNPS AT Aron, EC Gentry, KL McPhail, LF Nothias, M Nothias-Esposito, ... Nature protocols 15 (6), 1954-1991, 2020 | 403 | 2020 |
| MolNetEnhancer: Enhanced molecular networks by integrating metabolome mining and annotation tools M Ernst, KB Kang, AM Caraballo-Rodríguez, LF Nothias, J Wandy, ... Metabolites 9 (7), 144, 2019 | 302 | 2019 |
| Propagating annotations of molecular networks using in silico fragmentation RR da Silva, M Wang, LF Nothias, JJJ van der Hooft, ... PLoS computational biology 14 (4), e1006089, 2018 | 289 | 2018 |
| Chemical signaling involved in plant–microbe interactions FO Chagas, R de Cassia Pessotti, AM Caraballo-Rodríguez, MT Pupo Chemical Society Reviews 47 (5), 1652-1704, 2018 | 204 | 2018 |
| Mass spectrometry searches using MASST M Wang, AK Jarmusch, F Vargas, AA Aksenov, JM Gauglitz, K Weldon, ... Nature biotechnology 38 (1), 23-26, 2020 | 181 | 2020 |
| QIIME 2: reproducible, interactive, scalable, and extensible microbiome data science. PeerJ E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... Inc 6, e27295v2, 2018 | 169 | 2018 |
| Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment R Schmid, D Petras, LF Nothias, M Wang, AT Aron, A Jagels, H Tsugawa, ... Nature communications 12 (1), 3832, 2021 | 153 | 2021 |
| A convolutional neural network-based approach for the rapid annotation of molecularly diverse natural products R Reher, HW Kim, C Zhang, HH Mao, M Wang, LF Nothias, ... Journal of the American Chemical Society 142 (9), 4114-4120, 2020 | 141 | 2020 |
| The extracellular matrix protects Bacillus subtilis colonies from Pseudomonas invasion and modulates plant co-colonization C Molina-Santiago, JR Pearson, Y Navarro, MV Berlanga-Clavero, ... Nature communications 10 (1), 1919, 2019 | 115 | 2019 |
| ReDU: a framework to find and reanalyze public mass spectrometry data AK Jarmusch, M Wang, CM Aceves, RS Advani, S Aguirre, AA Aksenov, ... Nature Methods 17 (9), 901-904, 2020 | 84 | 2020 |
| Natural products as mediators of disease N Garg, T Luzzatto-Knaan, AV Melnik, AM Caraballo-Rodríguez, ... Natural product reports 34 (2), 194-219, 2017 | 76 | 2017 |
| Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages JM Gauglitz, CM Aceves, AA Aksenov, G Aleti, J Almaliti, A Bouslimani, ... Food chemistry 302, 125290, 2020 | 57 | 2020 |
| Endophytic Actinobacteria from the Brazilian Medicinal Plant Lychnophora ericoides Mart. and the Biological Potential of Their Secondary Metabolites R Conti, FO Chagas, AM Caraballo‐Rodriguez, WGP Melo, ... Chemistry & Biodiversity 13 (6), 727-736, 2016 | 52 | 2016 |
| Wildlife-microbiome interactions and disease: exploring opportunities for disease mitigation across ecological scales CL Williams, AM Caraballo-Rodríguez, C Allaband, A Zarrinpar, R Knight, ... Drug Discovery Today: Disease Models 28, 105-115, 2018 | 37 | 2018 |
| Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery B Behsaz, E Bode, A Gurevich, YN Shi, F Grundmann, D Acharya, ... Nature communications 12 (1), 3225, 2021 | 35 | 2021 |
| Chemical interplay and complementary adaptative strategies toggle bacterial antagonism and co-existence C Molina-Santiago, D Vela-Corcía, D Petras, L Díaz-Martínez, ... Cell Reports 36 (4), 2021 | 30 | 2021 |
Pieter C DorresteinUCSDVerified email at ucsd.edu
