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David Ruckerbauer
David Ruckerbauer
Junior Researcher, ACIB, BOKU
Verified email at acib.at
Title
Cited by
Cited by
Year
A consensus genome-scale reconstruction of Chinese hamster ovary cell metabolism
H Hefzi, KS Ang, M Hanscho, A Bordbar, D Ruckerbauer, M Lakshmanan, ...
Cell systems 3 (5), 434-443. e8, 2016
2352016
Elementary flux modes in a nutshell: properties, calculation and applications
J Zanghellini, DE Ruckerbauer, M Hanscho, C Jungreuthmayer
Biotechnology journal 8 (9), 1009-1016, 2013
1502013
Nutritional requirements of the BY series of Saccharomyces cerevisiae strains for optimum growth
M Hanscho, DE Ruckerbauer, N Chauhan, HF Hofbauer, S Krahulec, ...
FEMS yeast research 12 (7), 796-808, 2012
1212012
Quantitative analysis of proteome and lipidome dynamics reveals functional regulation of global lipid metabolism
A Casanovas, RR Sprenger, K Tarasov, DE Ruckerbauer, ...
Chemistry & biology 22 (3), 412-425, 2015
882015
Metabolomics integrated elementary flux mode analysis in large metabolic networks
MP Gerstl, DE Ruckerbauer, D Mattanovich, C Jungreuthmayer, ...
Scientific reports 5 (1), 8930, 2015
672015
What can mathematical modelling say about CHO metabolism and protein glycosylation?
SN Galleguillos, D Ruckerbauer, MP Gerstl, N Borth, M Hanscho, ...
Computational and structural biotechnology journal 15, 212-221, 2017
552017
What CHO is made of: Variations in the biomass composition of Chinese hamster ovary cell lines
D Széliová, DE Ruckerbauer, SN Galleguillos, LB Petersen, K Natter, ...
Metabolic engineering 61, 288-300, 2020
522020
regEfmtool: Speeding up elementary flux mode calculation using transcriptional regulatory rules in the form of three-state logic
C Jungreuthmayer, DE Ruckerbauer, J Zanghellini
Biosystems 113 (1), 37-39, 2013
492013
A metabolic CRISPR-Cas9 screen in Chinese hamster ovary cells identifies glutamine-sensitive genes
KJ la Cour Karottki, H Hefzi, S Li, LE Pedersen, PN Spahn, C Joshi, ...
Metabolic engineering 66, 114-122, 2021
192021
Bis(1,5-cyclooctadiene)nickel(0)
JW Wielandt, D Ruckerbauer
Inorganic Syntheses 35 (120), 2010
182010
Predicting genetic engineering targets with Elementary Flux Mode Analysis: a review of four current methods
DE Ruckerbauer, C Jungreuthmayer, J Zanghellini
New biotechnology 32 (6), 534-546, 2015
172015
Avoiding the enumeration of infeasible elementary flux modes by including transcriptional regulatory rules in the enumeration process saves computational costs
C Jungreuthmayer, DE Ruckerbauer, MP Gerstl, M Hanscho, ...
PloS one 10 (6), e0129840, 2015
172015
Genetic and epigenetic variation across genes involved in energy metabolism and mitochondria of Chinese hamster ovary cell lines
H Dhiman, MP Gerstl, D Ruckerbauer, M Hanscho, H Himmelbauer, ...
Biotechnology journal 14 (7), 1800681, 2019
142019
Design of optimally constructed metabolic networks of minimal functionality
DE Ruckerbauer, C Jungreuthmayer, J Zanghellini
PLoS One 9 (3), e92583, 2014
142014
Utilizing gene regulatory information to speed up the calculation of elementary flux modes
C Jungreuthmayer, DE Ruckerbauer, J Zanghellini
arXiv preprint arXiv:1208.1853, 2012
132012
Towards rational glyco-engineering in CHO: from data to predictive models
J Štor, DE Ruckerbauer, D Széliová, J Zanghellini, N Borth
Current Opinion in Biotechnology 71, 9-17, 2021
112021
Key challenges in designing CHO chassis platforms
A Hamdi, D Széliová, DE Ruckerbauer, I Rocha, N Borth, J Zanghellini
Processes 8 (6), 643, 2020
112020
Benzo annulated cycloheptatriene PCP pincer iridium complexes
W Leis, S Wernitz, B Reichart, D Ruckerbauer, JW Wielandt, HA Mayer
Dalton Transactions 43 (32), 12187-12199, 2014
102014
Robust analytical methods for the accurate quantification of the total biomass composition of mammalian cells
D Széliová, H Schoeny, Š Knez, C Troyer, C Coman, E Rampler, ...
Metabolic Flux Analysis in Eukaryotic Cells: Methods and Protocols, 119-160, 2020
92020
Inclusion of maintenance energy improves the intracellular flux predictions of CHO
D Széliová, J Štor, I Thiel, M Weinguny, M Hanscho, G Lhota, N Borth, ...
PLoS Computational Biology 17 (6), e1009022, 2021
62021
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