| Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows N Shah, MG Nute, T Warnow, M Pop Bioinformatics 35 (9), 1613-1614, 2019 | 83 | 2019 |
| SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning A Balaji, B Kille, AD Kappell, GD Godbold, M Diep, RAL Elworth, Z Qian, ... Genome biology 23 (1), 133, 2022 | 26 | 2022 |
| TIPP2: metagenomic taxonomic profiling using phylogenetic markers N Shah, EK Molloy, M Pop, T Warnow Bioinformatics 37 (13), 1839-1845, 2021 | 22 | 2021 |
| A critical assessment of gene catalogs for metagenomic analysis S Commichaux, N Shah, J Ghurye, A Stoppel, JA Goodheart, GG Luque, ... Bioinformatics 37 (18), 2848-2857, 2021 | 20 | 2021 |
| Outlier detection in BLAST hits N Shah, SF Altschul, M Pop Algorithms for Molecular Biology 13, 1-9, 2018 | 18 | 2018 |
| Embracing ambiguity in the taxonomic classification of microbiome sequencing data N Shah, JS Meisel, M Pop Frontiers in Genetics 10, 465774, 2019 | 12 | 2019 |
| SeqScreen: a biocuration platform for robust taxonomic and biological process characterization of nucleic acid sequences of interest D Albin, D Nasko, RAL Elworth, J Lu, A Balaji, C Diaz, N Shah, J Selengut, ... 2019 IEEE international conference on bioinformatics and biomedicine (BIBM …, 2019 | 10 | 2019 |
| Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up … JS Meisel, DJ Nasko, B Brubach, V Cepeda-Espinoza, J Chopyk, ... Microbiome 6, 1-10, 2018 | 10 | 2018 |
| Current state of and future opportunities for prediction in microbiome research: Report from the Mid-Atlantic Microbiome Meet-up in Baltimore on 9 January 2019 E Sakowski, G Uritskiy, R Cooper, M Gomes, MR McLaren, JS Meisel, ... Msystems 4 (5), 10.1128/msystems. 00392-19, 2019 | 8 | 2019 |
| metagenomeFeatures: an R package for working with 16S rRNA reference databases and marker-gene survey feature data ND Olson, N Shah, J Kancherla, J Wagner, JN Paulson, H Corrada Bravo Bioinformatics 35 (19), 3870-3872, 2019 | 8 | 2019 |
| Binnacle: using scaffolds to improve the contiguity and quality of metagenomic bins HS Muralidharan, N Shah, JS Meisel, M Pop Frontiers in Microbiology 12, 638561, 2021 | 6 | 2021 |
| NCBI’s virus discovery codeathon: building “FIVE”—The Federated Index of Viral Experiments API index J Martí-Carreras, AR Gener, SD Miller, AF Brito, CE Camacho, R Connor, ... Viruses 12 (12), 1424, 2020 | 4 | 2020 |
| Data-driven algorithms for characterizing microbial communities N Shah University of Maryland, College Park, 2021 | | 2021 |
Mihai PopProfessor of Computer Science, University of Maryland, College ParkVerified email at umd.edu
