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Satyavani Vemparala
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Year
Cationic spacer arm design strategy for control of antimicrobial activity and conformation of amphiphilic methacrylate random copolymers
EF Palermo, S Vemparala, K Kuroda
Biomacromolecules 13 (5), 1632-1641, 2012
1912012
Synthetic mimics of antimicrobial peptides
A Som, S Vemparala, I Ivanov, GN Tew
Peptide Science 90 (2), 83-93, 2008
1892008
Molecular dynamics calculations suggest a conduction mechanism for the M2 proton channel from influenza A virus
E Khurana, MD Peraro, R DeVane, S Vemparala, WF DeGrado, ML Klein
Proceedings of the National Academy of Sciences 106 (4), 1069-1074, 2009
1372009
Synthetic random copolymers as a molecular platform to mimic host-defense antimicrobial peptides
H Takahashi, G Caputo, S Vemparala, K Kuroda
Bioconjugate Chemistry 38 (5), 1340–1350, 2017
1192017
Characterization of nonbiological antimicrobial polymers in aqueous solution and at water− lipid interfaces from all-atom molecular dynamics
I Ivanov, S Vemparala, V Pophristic, K Kuroda, WF DeGrado, ...
Journal of the American Chemical Society 128 (6), 1778-1779, 2006
1022006
The design and evaluation of heparin-binding foldamers
S Choi, DJ Clements, V Pophristic, I Ivanov, S Vemparala, JS Bennett, ...
Angewandte Chemie-International Edition 44 (41), 6685-6688, 2005
932005
Partitioning of anesthetics into a lipid bilayer and their interaction with membrane-bound peptide bundles
S Vemparala, L Saiz, RG Eckenhoff, ML Klein
Biophysical journal 91 (8), 2815-2825, 2006
852006
Large-scale molecular dynamics simulations of alkanethiol self-assembled monolayers
S Vemparala, BB Karki, RK Kalia, A Nakano, P Vashishta
The Journal of chemical physics 121 (9), 4323-4330, 2004
852004
Scalable and portable implementation of the fast multipole method on parallel computers
S Ogata, TJ Campbell, RK Kalia, A Nakano, P Vashishta, S Vemparala
Computer Physics Communications 153 (3), 445-461, 2003
762003
Isosteric substitution in cationic-amphiphilic polymers reveals an important role for hydrogen bonding in bacterial membrane interactions
D Uppu, MM Konai, U Baul, P Singh, TK Siersma, S Samaddar, ...
Chemical science 7 (7), 4613-4623, 2016
662016
Controlling the shape and flexibility of arylamides: a combined ab initio, ab initio molecular dynamics, and classical molecular dynamics study
V Pophristic, S Vemparala, I Ivanov, Z Liu, ML Klein, WF DeGrado
The Journal of Physical Chemistry B 110 (8), 3517-3526, 2006
482006
Interaction of multiple biomimetic antimicrobial polymers with model bacterial membranes
U Baul, K Kuroda, S Vemparala
The Journal of chemical physics 141 (8), 2014
462014
The role of conformation in ion permeation in a K+ channel
C Domene, S Vemparala, S Furini, K Sharp, ML Klein
Journal of the American Chemical Society 130 (11), 3389-3398, 2008
462008
Role of aromatic localization in the gating process of a potassium channel
C Domene, S Vemparala, ML Klein, C Vénien-Bryan, DA Doyle
Biophysical journal 90 (1), L01-L03, 2006
462006
Mechanism of chain collapse of strongly charged polyelectrolytes
AM Tom, S Vemparala, R Rajesh, NV Brilliantov
Physical Review Letters 117, 147801, 2016
432016
Computational studies on the interactions of inhalational anesthetics with proteins
S Vemparala, C Domene, ML Klein
Accounts of chemical research 43 (1), 103-110, 2010
402010
Atomistic simulations of a multicomponent asymmetric lipid bilayer
A Polley, S Vemparala, M Rao
The Journal of Physical Chemistry B 116 (45), 13403-13410, 2012
392012
Aggregation of rod-like polyelectrolyte chains in the presence of monovalent counterions
A Varghese, R Rajesh, S Vemparala
The Journal of chemical physics 137 (23), 2012
352012
Interaction of anesthetics with open and closed conformations of a potassium channel studied via molecular dynamics and normal mode analysis
S Vemparala, C Domene, ML Klein
Biophysical journal 94 (11), 4260-4269, 2008
312008
Role of loop dynamics in thermal stability of mesophilic and thermophilic adenylosuccinate synthetase: a molecular dynamics and normal mode analysis study
S Vemparala, S Mehrotra, H Balaram
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1814 (5), 630-637, 2011
292011
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