| Bacterial transformation buffers environmental fluctuations through the reversible integration of mobile genetic elements G Carvalho, D Fouchet, G Danesh, AS Godeux, MH Laaberki, D Pontier, ... Mbio 11 (2), 10.1128/mbio. 02443-19, 2020 | 20 | 2020 |
| Early phylodynamics analysis of the COVID-19 epidemic in France G Danesh, B Elie, Y Michalakis, MT Sofonea, A Bal, S Behillil, G Destras, ... Peer Community Journal 1, 2021 | 17 | 2021 |
| Simulating trajectories and phylogenies from population dynamics models with TiPS G Danesh, E Saulnier, O Gascuel, M Choisy, S Alizon bioRxiv, 2020.11. 09.373795, 2020 | 9* | 2020 |
| Quantifying transmission dynamics of acute hepatitis C virus infections in a heterogeneous population using sequence data G Danesh, V Virlogeux, C Ramière, C Charre, L Cotte, S Alizon PLoS Pathogens 17 (9), e1009916, 2021 | 6 | 2021 |
| Rt2: computing and visualising COVID-19 epidemics temporal reproduction number B Reyné, G Danesh, S Alizon, MT Sofonea medRxiv, 2020.12. 05.20244376, 2020 | 3 | 2020 |
| COVFlow: performing virus phylodynamics analyses from selected SARS-CoV-2 genome sequences G Danesh, C Boennec, L Verdurme, M Roussel, S Trombert-Paolantoni, ... bioRxiv, 2022.06. 17.496544, 2022 | 1 | 2022 |
| Spread of SARS-CoV-2 Delta variant infections bearing the S: E484Q and S: T95I mutations in July and August 2021 in France L Verdurme, G Danesh, S Trombert-Paolantoni, MT Sofonea, V Noel, ... medRxiv, 2021.09. 13.21263371, 2021 | 1 | 2021 |
| Phylodynamique des virus évoluant rapidement: approches par calcul bayésien approché et par vraisemblance G Danesh Université Montpellier, 2021 | 1 | 2021 |
| Estimation du nombre de reproduction de l’épidémie de COVID-19 en France G Danesh, S Alizon Centre national de la recherche scientifique (CNRS); Institut de recherche …, 2020 | 1 | 2020 |
| COVFlow: phylodynamics analyses of viruses from selected SARS-CoV-2 genome sequences G Danesh, C Boennec, L Verdurme, M Roussel, S Trombert-Paolantoni, ... Peer Community Journal 3, 2023 | | 2023 |
| COVFlow: virus phylodynamics analyses from selected SARS-CoV-2 sequences (preprint) G Danesh, C Boennec, L Verdurme, M Roussel, S Trombert, B Visseaux, ... | | 2022 |
| Spread of SARS-CoV-2 Delta variant infections bearing the S: E484Q and S: T95I mutations in July and August 2021 in France (preprint) L Verdume, G Danesh, S Trombert, MT Sofonea, V Noel, V Foulongne, ... | | 2021 |
| Phylodynamique du COVID-19 en France G Danesh, B Elie, S Alizon Centre National de la Recherche Scientifique (CNRS); Institut de Recherche …, 2020 | | 2020 |
| Early phylodynamics analysis of the COVID-19 epidemics in France (preprint) G Danesh, B Elie, Y Michalakis, MT Sofonea, A Bal, S Behillil, G Destras, ... | | 2020 |
| Rt2: computing and visualising COVID-19 epidemics temporal reproduction number (preprint) B Reyné, G Danesh, S Alizon, MT Sofonea | | 2020 |
| sequences G Danesh, C Boennec, L Verdurme, M Roussel, S Trombert-Paolantoni, ... | | |
| COVFlow: virus phylodynamics analyses from selected G Danesh, C Boennec, L Verdurme, M Roussel, S Trombert-Paolantoni, ... | | |
