| Fast, sensitive and accurate integration of single-cell data with Harmony I Korsunsky, N Millard, J Fan, K Slowikowski, F Zhang, K Wei, ... Nature methods 16 (12), 1289-1296, 2019 | 3808 | 2019 |
| RNA velocity of single cells G La Manno, R Soldatov, A Zeisel, E Braun, H Hochgerner, V Petukhov, ... Nature 560 (7719), 494-498, 2018 | 2825 | 2018 |
| Integrative single-cell analysis of transcriptional and epigenetic states in the human adult brain BB Lake, S Chen, BC Sos, J Fan, GE Kaeser, YC Yung, TE Duong, D Gao, ... Nature biotechnology 36 (1), 70-80, 2018 | 826 | 2018 |
| Spatial transcriptome profiling by MERFISH reveals subcellular RNA compartmentalization and cell cycle-dependent gene expression C Xia, J Fan, G Emanuel, J Hao, X Zhuang Proceedings of the National Academy of Sciences 116 (39), 19490-19499, 2019 | 505 | 2019 |
| Locally Disordered Methylation Forms the Basis of Intratumor Methylome Variation in Chronic Lymphocytic Leukemia DA Landau, K Clement, MJ Ziller, P Boyle, J Fan, H Gu, K Stevenson, ... Cancer cell 26 (6), 813-825, 2014 | 378 | 2014 |
| Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis J Fan, N Salathia, R Liu, GE Kaeser, YC Yung, JL Herman, F Kaper, ... Nature methods 13 (3), 241-244, 2016 | 373 | 2016 |
| Clonal evolution in patients with chronic lymphocytic leukaemia developing resistance to BTK inhibition JA Burger, DA Landau, A Taylor-Weiner, I Bozic, H Zhang, K Sarosiek, ... Nature communications 7 (1), 11589, 2016 | 370 | 2016 |
| Cell-Type-Specific Alternative Splicing Governs Cell Fate in the Developing Cerebral Cortex X Zhang, MH Chen, X Wu, A Kodani, J Fan, R Doan, M Ozawa, J Ma, ... Cell 166 (5), 1147-1162. e15, 2016 | 303 | 2016 |
| Interactions between cancer cells and immune cells drive transitions to mesenchymal-like states in glioblastoma T Hara, R Chanoch-Myers, ND Mathewson, C Myskiw, L Atta, L Bussema, ... Cancer Cell 39 (6), 779-792. e11, 2021 | 293 | 2021 |
| Transcriptomic Characterization of SF3B1 Mutation Reveals Its Pleiotropic Effects in Chronic Lymphocytic Leukemia L Wang, AN Brooks, J Fan, Y Wan, R Gambe, S Li, S Hergert, S Yin, ... Cancer Cell 30 (5), 750-763, 2016 | 213 | 2016 |
| Linking transcriptional and genetic tumor heterogeneity through allele analysis of single-cell RNA-seq data J Fan, HO Lee, S Lee, D Ryu, S Lee, C Xue, SJ Kim, K Kim, N Barkas, ... Genome research 28 (8), 1217-1227, 2018 | 203 | 2018 |
| Clonal decomposition and dna replication states defined by scaled single-cell genome sequencing E Laks, A McPherson, H Zahn, D Lai, A Steif, J Brimhall, J Biele, B Wang, ... Cell 179 (5), 1207-1221. e22, 2019 | 179 | 2019 |
| Single-cell transcriptomics in cancer: Computational challenges and opportunities J Fan, K Slowikowski, F Zhang Experimental & Molecular Medicine 52 (9), 1452-1465, 2020 | 143 | 2020 |
| A murine model of chronic lymphocytic leukemia based on B cell-restricted expression of Sf3b1 mutation and Atm deletion S Yin, RG Gambe, J Sun, AZ Martinez, ZJ Cartun, FFD Regis, Y Wan, ... Cancer cell 35 (2), 283-296. e5, 2019 | 94 | 2019 |
| Rewiring of human neurodevelopmental gene regulatory programs by human accelerated regions KM Girskis, AB Stergachis, EM DeGennaro, RN Doan, X Qian, ... Neuron 109 (20), 3239-3251. e7, 2021 | 86 | 2021 |
| Integrated single-cell genetic and transcriptional analysis suggests novel drivers of chronic lymphocytic leukemia L Wang, J Fan, JM Francis, G Georghiou, S Hergert, S Li, R Gambe, ... Genome research 27 (8), 1300-1311, 2017 | 84 | 2017 |
| Reference-free cell type deconvolution of multi-cellular pixel-resolution spatially resolved transcriptomics data BF Miller, F Huang, L Atta, A Sahoo, J Fan Nature communications 13 (1), 2339, 2022 | 80 | 2022 |
| Characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomic data with nonuniform cellular densities BF Miller, D Bambah-Mukku, C Dulac, X Zhuang, J Fan Genome research 31 (10), 1843-1855, 2021 | 78 | 2021 |
| Computational challenges and opportunities in spatially resolved transcriptomic data analysis L Atta, J Fan Nature Communications 12 (1), 5283, 2021 | 41 | 2021 |
| Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP) S Jain, L Pei, JM Spraggins, M Angelo, JP Carson, N Gehlenborg, F Ginty, ... Nature cell biology 25 (8), 1089-1100, 2023 | 36 | 2023 |
Peter KharchenkoAltos LabsVerified email at altoslabs.com
