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Javad Zahiri
Javad Zahiri
Senior Bioinformatics Scientist
Verified email at health.ucsd.edu
Title
Cited by
Cited by
Year
Post-translational modifications in proteins: resources, tools and prediction methods
S Ramazi, J Zahiri
Database 2021, baab012, 2021
4272021
Computational prediction of protein–protein interaction networks: algorithms and resources
J Zahiri, J Hannon Bozorgmehr, A Masoudi-Nejad
Current genomics 14 (6), 397-414, 2013
1632013
PPIevo: Protein–protein interaction prediction from PSSM based evolutionary information
J Zahiri, O Yaghoubi, M Mohammad-Noori, R Ebrahimpour, ...
Genomics 102 (4), 237-242, 2013
1532013
Evaluation of post-translational modifications in histone proteins: A review on histone modification defects in developmental and neurological disorders
S Ramazi, A Allahverdi, J Zahiri
Journal of Biosciences, 2020
1172020
Digging deeper into volatile organic compounds associated with cancer
S Janfaza, B Khorsand, M Nikkhah, J Zahiri
Biology Methods and Protocols 4 (1), bpz014, 2019
972019
LocFuse: human protein–protein interaction prediction via classifier fusion using protein localization information
J Zahiri, M Mohammad-Noori, R Ebrahimpour, S Saadat, JH Bozorgmehr, ...
Genomics 104 (6), 496-503, 2014
622014
VIS/NIR imaging application for honey floral origin determination
S Minaei, S Shafiee, G Polder, N Moghadam-Charkari, S van Ruth, ...
Infrared Physics & Technology 86, 218-225, 2017
542017
Predicting protein–protein interactions between human and hepatitis C virus via an ensemble learning method
A Emamjomeh, B Goliaei, J Zahiri, R Ebrahimpour
Molecular Biosystems 10 (12), 3147-3154, 2014
512014
Protein complex prediction: A survey
J Zahiri, A Emamjomeh, S Bagheri, A Ivazeh, G Mahdevar, HS Tehrani, ...
Genomics 112 (1), 174-183, 2020
492020
Gene co-expression network reconstruction: a review on computational methods for inferring functional information from plant-based expression data
A Emamjomeh, ES Robat, J Zahiri, M Solouki, P Khosravi
Plant Biotechnology Reports, 1-16, 2017
452017
Tag SNP selection via a genetic algorithm
G Mahdevar, J Zahiri, M Sadeghi, A Nowzari-Dalini, H Ahrabian
Journal of Biomedical informatics 43 (5), 800-804, 2010
382010
rpiCOOL: A tool for In Silico RNA–protein interaction detection using random forest
M Akbaripour-Elahabad, J Zahiri, R Rafeh, M Eslami, M Azari
Journal of theoretical biology 402, 1-8, 2016
352016
Gibberellin causes wide transcriptional modifications in the early stage of grape cluster development
Y Shiri, M Solouki, E Ebrahimie, A Emamjomeh, J Zahiri
Genomics 112 (1), 820-830, 2020
252020
Large scale validation of an early-age eye-tracking biomarker of an autism spectrum disorder subtype
TH Wen, A Cheng, C Andreason, J Zahiri, Y Xiao, R Xu, B Bao, ...
Scientific reports 12 (1), 4253, 2022
242022
Assessment of pan evaporation changes in South Western Iran
A Hooshmand, M Salarijazi, M Bahrami, J Zahiri, S Soleimani
African Journal of Agricultural Research 8 (16), 1449-1456, 2013
222013
Cancer Odor Database (COD): a critical databank for cancer diagnosis research
S Janfaza, M Banan Nojavani, B Khorsand, M Nikkhah, J Zahiri
Database 2017, bax055, 2017
202017
A systems biology approach to reconcile metabolic network models with application to Synechocystis sp. PCC 6803 for biofuel production
R Mohammadi, J Fallah-Mehrabadi, G Bidkhori, J Zahiri, MJ Niroomand, ...
Molecular BioSystems 12 (8), 2552-2561, 2016
202016
Novel BDNF-regulatory microRNAs in neurodegenerative disorders pathogenesis: An in silico study
F Khani-Habibabadi, S Askari, J Zahiri, M Javan, M Behmanesh
Computational biology and chemistry 83, 107153, 2019
192019
Proteomic profiling of the rat hippocampus from the kindling and pilocarpine models of epilepsy: potential targets in calcium regulatory network
L Sadeghi, AA Rizvanov, B Dabirmanesh, II Salafutdinov, M Sayyah, ...
Scientific reports 11 (1), 8252, 2021
182021
Alpha influenza virus infiltration prediction using virus-human protein-protein interaction network
B Khorsand, A Savadi, J Zahiri, M Naghibzadeh
Mathematical Biosciences and Engineering 17 (4), 3109-3129, 2020
172020
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Articles 1–20