| Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the Clavicipitaceae reveals dynamics of alkaloid loci CL Schardl, CA Young, U Hesse, SG Amyotte, K Andreeva, PJ Calie, ... PLoS genetics 9 (2), e1003323, 2013 | 433 | 2013 |
| Investigations on the Influence of Neotyphodium Endophytes on Plant Growth and Seed Yield of Lolium perenne Genotypes U Hesse, H Hahn, K Andreeva, K Förster, K Warnstorff, W Schöberlein, ... Crop science 44 (5), 1689-1695, 2004 | 62 | 2004 |
| Elimination of marker genes from transformed filamentous fungi by unselected transient transfection with a Cre-expressing plasmid S Florea, K Andreeva, C Machado, PM Mirabito, CL Schardl Fungal Genetics and Biology 46 (10), 721-730, 2009 | 59 | 2009 |
| MicroRNAs in the neural retina K Andreeva, NGF Cooper International journal of genomics 2014, 2014 | 52 | 2014 |
| Ischemia-reperfusion injury of the retina is linked to necroptosis via the ERK1/2-RIP3 pathway S Gao, K Andreeva, NGF Cooper Molecular vision 20, 1374, 2014 | 52 | 2014 |
| Gene Expression and Silencing Studies in Phytophthora infestans Reveal Infection-Specific Nutrient Transporters and a Role for the Nitrate Reductase Pathway in … M Abrahamian, AMV Ah-Fong, C Davis, K Andreeva, HS Judelson PLoS Pathogens 12 (12), e1006097, 2016 | 51 | 2016 |
| The induction of peripheral trained immunity in the pancreas incites anti-tumor activity to control pancreatic cancer progression AE Geller, R Shrestha, MR Woeste, H Guo, X Hu, C Ding, K Andreeva, ... Nature Communications 13 (1), 759, 2022 | 37 | 2022 |
| Time-dependent gene profiling indicates the presence of different phases for ischemia/reperfusion injury in retina K Andreeva, M Zhang, W Fan, X Li, Y Chen, JD Rebolledo-Mendez, ... Ophthalmology and eye diseases 6, OED. S17671, 2014 | 35 | 2014 |
| Circular RNAs: new players in gene regulation K Andreeva, NGF Cooper Advances in Bioscience and Biotechnology 6 (06), 433, 2015 | 28 | 2015 |
| Combined exposure to polychlorinated biphenyls and high-fat diet modifies the global epitranscriptomic landscape in mouse liver CM Klinge, KM Piell, BJ Petri, L He, X Zhang, J Pan, SN Rai, K Andreeva, ... Environmental Epigenetics 7 (1), dvab008, 2021 | 19 | 2021 |
| seekCRIT: detecting and characterizing differentially expressed circular RNAs using high-throughput sequencing data M Chaabane, K Andreeva, JY Hwang, TL Kook, JW Park, NGF Cooper PLOS Computational Biology 16 (10), e1008338, 2020 | 17 | 2020 |
| Regulatory networks in retinal ischemia-reperfusion injury K Andreeva, MM Soliman, NGF Cooper BMC genetics 16, 1-15, 2015 | 17 | 2015 |
| Multiomics analysis of the impact of polychlorinated biphenyls on environmental liver disease in a mouse model BJ Petri, KM Piell, B Wahlang, KZ Head, K Andreeva, EC Rouchka, J Pan, ... Environmental Toxicology and Pharmacology 94, 103928, 2022 | 12 | 2022 |
| Polychlorinated biphenyls alter hepatic m6A mRNA methylation in a mouse model of environmental liver disease BJ Petri, KM Piell, B Wahlang, KZ Head, K Andreeva, EC Rouchka, ... Environmental research 216, 114686, 2023 | 8 | 2023 |
| PARP1 regulates circular RNA biogenesis though control of transcriptional dynamics R Eleazer, K De Silva, K Andreeva, Z Jenkins, N Osmani, EC Rouchka, ... Cells 12 (8), 1160, 2023 | 6 | 2023 |
| Comparisons of ribosomal protein gene promoters indicate superiority of heterologous regulatory sequences for expressing transgenes in Phytophthora infestans L Poidevin, K Andreeva, C Khachatoorian, HS Judelson PloS one 10 (12), e0145612, 2015 | 6 | 2015 |
| Multicenter integrated analysis of noncoding CRISPRi screens D Yao, J Tycko, JW Oh, LR Bounds, SJ Gosai, L Lataniotis, ... Nature Methods, 1-12, 2024 | 5 | 2024 |
| Data navigation on the ENCODE portal MS Kagda, B Lam, C Litton, C Small, CA Sloan, E Spragins, F Tanaka, ... arXiv preprint arXiv:2305.00006, 2023 | 4 | 2023 |
| SEED PHYSIOLOGY, PRODUCTION & TECHNOLOGY-Investigations on the Influence of Neotyphodium Endophytes on Plant Growth and Seed Yield of Lolium perenne Genotypes U Hesse, H Hahn, K Andreeva, K Forster, K Warnstorff, W Schoberlein, ... Crop Science 44 (5), 1689-1695, 2004 | 4 | 2004 |
| An encyclopedia of enhancer-gene regulatory interactions in the human genome AR Gschwind, KS Mualim, A Karbalayghareh, MU Sheth, KK Dey, ... bioRxiv, 2023 | 3 | 2023 |
