| Design and proof of concept for targeted phage-based COVID-19 vaccination strategies with a streamlined cold-free supply chain DI Staquicini, FHF Tang, C Markosian, VJ Yao, FI Staquicini, ... Proceedings of the national academy of sciences 118 (30), e2105739118, 2021 | 41 | 2021 |
| Sterically confined rearrangements of SARS-CoV-2 Spike protein control cell invasion E Dodero-Rojas, JN Onuchic, PC Whitford Elife 10, e70362, 2021 | 33 | 2021 |
| The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome VG Contessoto, RR Cheng, A Hajitaheri, E Dodero-Rojas, MF Mello, ... Nucleic Acids Research 49 (D1), D172-D182, 2021 | 24 | 2021 |
| SMOG 2 and OpenSMOG: Extending the limits of structure‐based models AB de Oliveira Jr, VG Contessoto, A Hassan, S Byju, A Wang, Y Wang, ... Protein Science 31 (1), 158-172, 2022 | 16 | 2022 |
| On twin peak quasi-periodic oscillations resulting from the interaction between discoseismic modes and turbulence in accretion discs around black holes M Ortega-Rodríguez, H Solís-Sánchez, L Álvarez-García, E Dodero-Rojas Monthly Notices of the Royal Astronomical Society 492 (2), 1755-1760, 2020 | 15 | 2020 |
| Modeling Chikungunya control strategies and Mayaro potential outbreak in the city of Rio de Janeiro E Dodero-Rojas, LG Ferreira, VBP Leite, JN Onuchic, VG Contessoto PloS one 15 (1), e0222900, 2020 | 13 | 2020 |
| Genetic and structural analysis of SARS-CoV-2 spike protein for universal epitope selection C Markosian, DI Staquicini, P Dogra, E Dodero-Rojas, JH Lubin, ... Molecular biology and evolution 39 (5), msac091, 2022 | 9 | 2022 |
| PyMEGABASE: predicting cell-type-specific structural annotations of chromosomes using the epigenome E Dodero-Rojas, MF Mello, S Brahmachari, ABO Junior, VG Contessoto, ... Journal of Molecular Biology 435 (15), 168180, 2023 | 4 | 2023 |
| Apropos of Universal Epitope Discovery for COVID-19 Vaccines: A Framework for Targeted Phage Display-Based Delivery and Integration of New Evaluation Tools C Markosian, DI Staquicini, P Dogra, E Dodero-Rojas, FHF Tang, ... Biorxiv, 2021 | 3 | 2021 |
| Investigating human chromosome organization by whole-genome simulations MF Mello, AB Oliveira, E Dodero-Rojas, S Brahmachari, VG Contessoto, ... Biophysical Journal 123 (3), 366a, 2024 | | 2024 |
| Phase separation of AB compartments are modulated by lamina-chromatin interaction E Dodero-Rojas, V Contessoto, MF Mello, JN Onuchic Biophysical Journal 122 (3), 494a, 2023 | | 2023 |
| Evolutionary differences in the ACE2 reveals the molecular origins of COVID-19 susceptibility (preprint) RR Cheng, E Dodero-Rojas, M Di Pierro, JN Onuchic | | 2021 |
