Follow
Md Abul Hassan Samee
Md Abul Hassan Samee
Assistant Professor, Baylor College of Medicine
Verified email at bcm.edu - Homepage
Title
Cited by
Cited by
Year
Complex interdependence regulates heterotypic transcription factor distribution and coordinates cardiogenesis
L Luna-Zurita, CU Stirnimann, S Glatt, BL Kaynak, S Thomas, F Baudin, ...
Cell 164 (5), 999-1014, 2016
2192016
Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression
X He, MAH Samee, C Blatti, S Sinha
PLoS computational biology 6 (9), e1000935, 2010
2072010
A De Novo Shape Motif Discovery Algorithm Reveals Preferences of Transcription Factors for DNA Shape Beyond Sequence Motifs
MAH Samee, BG Bruneau, KS Pollard
Cell systems 8 (1), 27-42. e6, 2019
632019
A systematic ensemble approach to thermodynamic modeling of gene expression from sequence data
MAH Samee, B Lim, N Samper, H Lu, CA Rushlow, G Jiménez, ...
Cell systems 1 (6), 396-407, 2015
462015
Massively parallel dissection of human accelerated regions in human and chimpanzee neural progenitors
H Ryu, F Inoue, S Whalen, A Williams, M Kircher, B Martin, B Alvarado, ...
BioRxiv 256313, 2018
402018
Evidence for deep regulatory similarities in early developmental programs across highly diverged insects
M Kazemian, K Suryamohan, JY Chen, Y Zhang, MAH Samee, MS Halfon, ...
Genome biology and evolution 6 (9), 2301-2320, 2014
402014
Quantitative modeling of a gene's expression from its intergenic sequence
MAH Samee, S Sinha
PLoS computational biology 10 (3), e1003467, 2014
382014
Simulations of enhancer evolution provide mechanistic insights into gene regulation
T Duque, MAH Samee, M Kazemian, HN Pham, MH Brodsky, S Sinha
Molecular biology and evolution 31 (1), 184-200, 2014
382014
Machine learning dissection of human accelerated regions in primate neurodevelopment
S Whalen, F Inoue, H Ryu, T Fair, E Markenscoff-Papadimitriou, K Keough, ...
Neuron 111 (6), 857-873. e8, 2023
352023
Evaluating thermodynamic models of enhancer activity on cellular resolution gene expression data
MAH Samee, S Sinha
Methods 62 (1), 79-90, 2013
282013
Cell-type modeling in spatial transcriptomics data elucidates spatially variable colocalization and communication between cell-types in mouse brain
FJG Canozo, Z Zuo, JF Martin, MAH Samee
Cell Systems 13 (1), 58-70. e5, 2022
172022
Minimum segment drawings of series-parallel graphs with the maximum degree three
MAH Samee, MJ Alam, MA Adnan, MS Rahman
International Symposium on Graph Drawing, 408-419, 2008
142008
Quantitative Measurement and Thermodynamic Modeling of Fused Enhancers Support a Two-Tiered Mechanism for Interpreting Regulatory DNA
MAH Samee, T Lydiard-Martin, KM Biette, BJ Vincent, MD Bragdon, ...
Cell reports 21 (1), 236-245, 2017
132017
Incorporating chromatin accessibility data into sequence-to-expression modeling
PC Peng, MAH Samee, S Sinha
Biophysical journal 108 (5), 1257-1267, 2015
132015
Global parameter estimation for thermodynamic models of transcriptional regulation
Y Suleimenov, A Ay, MAH Samee, JM Dresch, S Sinha, DN Arnosti
Methods 62 (1), 99-108, 2013
132013
Minimum-Layer Upward Drawings of Trees.
MJ Alam, MAH Samee, M Rabbi, MS Rahman
J. Graph Algorithms Appl. 14 (2), 245-267, 2010
132010
Dual-Mode Tumor Imaging Using Probes That Are Responsive to Hypoxia-Induced Pathological Conditions
SAAS Subasinghe, R Pautler, MAH Samee, JT Yustein, MJ Allen
Biosensors 12 (7), 478, 2022
102022
Upward Planar Drawings of Series-Parallel Digraphs with Maximum Degree Three.
MAH Samee, MS Rahman
WALCOM 7, 28-45, 2007
72007
Decoding the PITX2 controlled genetic network in atrial fibrillation
JD Steimle, FJG Canozo, M Park, ZA Kadow, MAH Samee, JF Martin
JCI Insight, 2022
62022
Structural underpinnings of mutation rate variations in the human genome
Z Liu, MAH Samee
Nucleic Acids Research 51 (14), 7184-7197, 2023
52023
The system can't perform the operation now. Try again later.
Articles 1–20