| Integrative analysis of 111 reference human epigenomes A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ... Nature 518 (7539), 317-330, 2015 | 6096 | 2015 |
| A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014 | 1926 | 2014 |
| Extensive introgression in a malaria vector species complex revealed by phylogenomics MC Fontaine, JB Pease, A Steele, RM Waterhouse, DE Neafsey, ... Science 347 (6217), 1258524, 2015 | 609 | 2015 |
| Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes DE Neafsey, RM Waterhouse, MR Abai, SS Aganezov, MA Alekseyev, ... Science 347 (6217), 1258522, 2015 | 593 | 2015 |
| Comparative analysis of regulatory information and circuits across distant species AP Boyle, CL Araya, C Brdlik, P Cayting, C Cheng, Y Cheng, K Gardner, ... Nature 512 (7515), 453-456, 2014 | 224 | 2014 |
| Phylogenetic Identification and Functional Characterization of Orthologs and Paralogs across Human, Mouse, Fly, and Worm. bioRxiv. 2014 YC Wu, MS Bansal, MD Rasmussen Publisher Full Text, 0 | 184 | |
| TreeFix: statistically informed gene tree error correction using species trees YC Wu, MD Rasmussen, MS Bansal, M Kellis Systematic biology 62 (1), 110-120, 2013 | 126 | 2013 |
| Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees YC Wu, MD Rasmussen, MS Bansal, M Kellis Genome research 24 (3), 475-486, 2014 | 78 | 2014 |
| Improved gene tree error correction in the presence of horizontal gene transfer MS Bansal, YC Wu, EJ Alm, M Kellis Bioinformatics 31 (8), 1211-1218, 2015 | 67 | 2015 |
| Pareto-optimal phylogenetic tree reconciliation R Libeskind-Hadas, YC Wu, MS Bansal, M Kellis Bioinformatics 30 (12), i87-i95, 2014 | 64 | 2014 |
| eMPRess: a systematic cophylogeny reconciliation tool S Santichaivekin, Q Yang, J Liu, R Mawhorter, J Jiang, T Wesley, YC Wu, ... Bioinformatics 37 (16), 2481-2482, 2021 | 56 | 2021 |
| Evolution at the Subgene Level: Domain Rearrangements in the Drosophila Phylogeny YC Wu, MD Rasmussen, M Kellis Molecular biology and evolution 29 (2), 689-705, 2012 | 55 | 2012 |
| Predicting antibody developability from sequence using machine learning X Chen, T Dougherty, C Hong, R Schibler, YC Zhao, R Sadeghi, ... biorxiv, 2020.06. 18.159798, 2020 | 22 | 2020 |
| Computing the diameter of the space of maximum parsimony reconciliations in the duplication-transfer-loss model J Haack, E Zupke, N Ramirez, YC Wu, R Libeskind-Hadas IEEE/ACM Transactions on Computational Biology and Bioinformatics 16 (1), 14-22, 2018 | 14 | 2018 |
| Phylogenetic identification and functional characterization of orthologs and paralogs across human, mouse, fly, and worm YC Wu, MS Bansal, MD Rasmussen, J Herrero, M Kellis Biorxiv, 005736, 2014 | 13 | 2014 |
| Inverse gold photonic crystals and conjugated polymer coated opals for functional materials PB Landon, J Gutierrez, JP Ferraris, IL Martinez, R Giridharagopal, ... Physica B: Condensed Matter 338 (1-4), 165-170, 2003 | 13 | 2003 |
| Coestimation of gene trees and reconciliations under a duplication-loss-coalescence model B Zhang, YC Wu Bioinformatics Research and Applications: 13th International Symposium …, 2017 | 11 | 2017 |
| Multiple optimal reconciliations under the duplication-loss-coalescence model H Du, YS Ong, M Knittel, R Mawhorter, N Liu, G Gross, R Tojo, ... IEEE/ACM transactions on computational biology and bioinformatics 18 (6 …, 2019 | 9 | 2019 |
| Reconciliation feasibility in the presence of gene duplication, loss, and coalescence with multiple individuals per species J Rogers, A Fishberg, N Youngs, YC Wu BMC bioinformatics 18, 1-10, 2017 | 8 | 2017 |
| A polynomial-time algorithm for minimizing the deep coalescence cost for level-1 species networks M LeMay, R Libeskind-Hadas, YC Wu IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (5 …, 2021 | 6 | 2021 |
Manolis KellisProfessor of Computer Science, MIT and Broad InstituteVerified email at mit.edu
