Madelyn Shapiro

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Cliff A JoslynChief Knowledge ScientistVerified email at pnnl.gov
Davis BrownPacific Northwest National LabVerified email at pnnl.gov
Brett A. JeffersonPacific Northwest National LaboratoryVerified email at pnnl.gov
Youjia ZhouUniversity of UtahVerified email at sci.utah.edu
Audun MyersPacific Northwest National LaboratoryVerified email at pnnl.gov
Brek MeurisSandia National LaboratoriesVerified email at sandia.gov
Archit RathorePhD Student, University of UtahVerified email at cs.utah.edu
Panos StinisPacific Northwest National LaboratoryVerified email at pnnl.gov
Carlos M Ortiz MarreroPacific Northwest National Laboratory, North Carolina State UniversityVerified email at pnnl.gov
Helen JennePacific Northwest National LaboratoryVerified email at pnnl.gov
Aivett BilbaoComputational Scientist at Pacific Northwest National LaboratoryVerified email at pnnl.gov
Sean ColbyScientist, Pacific Northwest National LaboratoryVerified email at pnnl.gov
Corey BroecklingColorado State UniversityVerified email at colostate.edu
Sinan G AksoyPacific Northwest National LaboratoryVerified email at ucsd.edu
Dustin ArendtPacific Northwest National LaboratoryVerified email at pnnl.gov
Ji Young YunPost-Masters RAVerified email at pnnl.gov
Andy LinPacific Northwest National LaboratoryVerified email at pnnl.gov
Henry KvingePacific Northwest National LabVerified email at pnnl.gov
Stephen J YoungPacific Northwest National LaboratoryVerified email at pnnl.gov
Nicholas KonzPhD Candidate, Duke UniversityVerified email at duke.edu

Madelyn Shapiro

Data Scientist, Pacific Northwest National Laboratory

Verified email at pnnl.gov

explainable AI scientific machine learning network science topological data analysis


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Topological analysis of temporal hypergraphs A Myers, C Joslyn, B Kay, E Purvine, G Roek, M Shapiro International Workshop on Algorithms and Models for the Web-Graph, 127-146, 2023	8	2023
Experimental observations of the topology of convolutional neural network activations E Purvine, D Brown, B Jefferson, C Joslyn, B Praggastis, A Rathore, ... Proceedings of the AAAI Conference on Artificial Intelligence 37 (8), 9470-9479, 2023	6	2023
Optimal renormalization of multiscale systems J Price, B Meuris, M Shapiro, P Stinis Proceedings of the National Academy of Sciences 118 (37), e2102266118, 2021	6	2021
The SVD of Convolutional Weights: A CNN Interpretability Framework B Praggastis, D Brown, CO Marrero, E Purvine, M Shapiro, B Wang arXiv preprint arXiv:2208.06894, 2022	5	2022
Comparing Mapper Graphs of Artificial Neuron Activations Y Zhou, H Jenne, D Brown, M Shapiro, B Jefferson, C Joslyn, ... 2023 Topological Data Analysis and Visualization (TopoInVis), 41-50, 2023	1	2023
Introducing Molecular Hypernetworks for Discovery in Multidimensional Metabolomics Data SM Colby, MR Shapiro, A Lin, A Bilbao, CD Broeckling, E Purvine, ... bioRxiv, 2023.09. 29.560191, 2023	1	2023
DeepDataProfiler: A Platform and Methodology for the Analysis and Interpretation of Neural Networks BL Praggastis, DR Brown, EAH Purvine, MR Shapiro, B Wang Pacific Northwest National Laboratory (PNNL), Richland, WA (United States), 2023		2023
HyperNetX: A Python package for modeling complex network data as hypergraphs B Praggastis, S Aksoy, D Arendt, M Bonicillo, C Joslyn, E Purvine, ... arXiv preprint arXiv:2310.11626, 2023		2023
Attributing Learned Concepts in Neural Networks to Training Data N Konz, C Godfrey, M Shapiro, J Tu, H Kvinge, D Brown arXiv preprint arXiv:2310.03149, 2023		2023
Molecular Hypernetworks for Exploration of Multi-Dimensional Metabolomics Data (Chyper) SM Colby, MR Shapiro, A Lin, A Bilbao, CD Broeckling, E Purvine, ... Pacific Northwest National Laboratory (PNNL), Richland, WA (United States), 2023		2023
HyperNetX: A Python package for modeling complex B Praggastis, S Aksoy, D Arendt, M Bonicillo, C Joslyn, E Purvine, ...
Enhanced Molecular Graph Embeddings with Inner Product Laplacians J Pope, B Kay, SJ Young, S Aksoy, H Jenne, M Shapiro, H Lee 2024 Joint Mathematics Meetings (JMM 2024), 0
Topology of machine learning activations B Jefferson, C Joslyn, B Praggastis, E Purvine, M Shapiro, B Wang, ... 2022 Virtual Joint Mathematics Meetings (JMM 2022), 0

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