| Benchmark problems for dynamic modeling of intracellular processes H Hass, C Loos, E Raimundez-Alvarez, J Timmer, J Hasenauer, C Kreutz Bioinformatics 35 (17), 3073-3082, 2019 | 70 | 2019 |
| HER2 Expression, Test Deviations, and Their Impact on Survival in Metastatic Gastric Cancer: Results From the Prospective Multicenter VARIANZ Study I Haffner, K Schierle, E Raimúndez, B Geier, D Maier, J Hasenauer, ... Journal of Clinical Oncology 39 (13), 1468-1478, 2021 | 66 | 2021 |
| PEtab—interoperable specification of parameter estimation problems in systems biology L Schmiester, Y Schälte, FT Bergmann, T Camba, E Dudkin, J Egert, ... PLoS computational biology 17 (1), e1008646, 2021 | 63 | 2021 |
| COVID-19 outbreak in Wuhan demonstrates the limitations of publicly available case numbers for epidemiological modelling. E Raimúndez, E Dudkin, J Vanhoefer, E Alamoudi, S Merkt, L Fuhrmann, ... Epidemics, 100439, 2021 | 19 | 2021 |
| A comparison of methods for quantifying prediction uncertainty in systems biology AF Villaverde, E Raimúndez, J Hasenauer, JR Banga IFAC-PapersOnLine 52 (26), 45-51, 2019 | 15 | 2019 |
| Assessment of prediction uncertainty quantification methods in systems biology AF Villaverde, E Raimúndez, J Hasenauer, JR Banga IEEE/ACM transactions on computational biology and bioinformatics, 2022 | 14 | 2022 |
| Self-amplifying pulsatile protein dynamics without positive feedback R Martinez-Corral, E Raimundez, Y Lin, MB Elowitz, J Garcia-Ojalvo Cell Systems 7 (4), 453-462. e1, 2018 | 13 | 2018 |
| Model-based analysis of response and resistance factors of cetuximab treatment in gastric cancer cell lines E Raimúndez, S Keller, G Zwingenberger, K Ebert, S Hug, FJ Theis, ... PLOS Computational Biology 16 (3), e1007147, 2020 | 11 | 2020 |
| Determining the effects of trastuzumab, cetuximab and afatinib by phosphoprotein, gene expression and phenotypic analysis in gastric cancer cell lines K Ebert, G Zwingenberger, E Barbaria, S Keller, C Heck, R Arnold, ... BMC cancer 20, 1-19, 2020 | 10 | 2020 |
| Combining gene expression analysis of gastric cancer cell lines and tumor specimens to identify biomarkers for anti-HER therapies—the role of HAS2, SHB and HBEGF K Ebert, I Haffner, G Zwingenberger, S Keller, E Raimúndez, R Geffers, ... BMC cancer 22 (1), 254, 2022 | 6 | 2022 |
| pyPESTO—Parameter EStimation TOolbox for python (0.2. 7) Y Schälte, F Fröhlich, P Stapor, J Vanhoefer, D Weindl, PJ Jost, D Wang, ... URL https://zenodo. org/record/2553546, 2021 | 6 | 2021 |
| Heterogeneity of HER2 expression in gastric cancer (GC) leads to high deviation rates between local and central testing and hampers efficacy of anti-HER2 therapy: Survival … F Lordick, I Haffner, B Luber, D Maier, E Raimundez, J Hasenauer, ... Cancer Research 78 (13_Supplement), 2615-2615, 2018 | 6 | 2018 |
| pyPESTO—Parameter EStimation TOolbox for python Y Schälte, F Fröhlich, P Stapor, J Vanhoefer, D Weindl, PJ Jost, D Wang, ... See https://github. com/ICB-DCM/pyPESTO, 2021 | 5 | 2021 |
| pyPESTO: a modular and scalable tool for parameter estimation for dynamic models Y Schälte, F Fröhlich, PJ Jost, J Vanhoefer, D Pathirana, P Stapor, ... Bioinformatics 39 (11), btad711, 2023 | 4 | 2023 |
| Integrative modelling of reported case numbers and seroprevalence reveals time-dependent test efficiency and infectious contacts L Contento, N Castelletti, E Raimúndez, R Le Gleut, Y Schälte, P Stapor, ... Epidemics 43, 100681, 2023 | 4 | 2023 |
| HER2positive gastric cancer: intermediate HER2 expression levels are related to high test deviation rates between local and central pathology and worse survival I Haffner, K Schierle, D Maier, G Birgitta, E Raimundez, J Hasenauer, ... ONCOLOGY RESEARCH AND TREATMENT 42, 306-306, 2019 | 1 | 2019 |
| Posterior marginalization accelerates Bayesian inference for dynamical models of biological processes E Raimúndez, M Fedders, J Hasenauer Iscience 26 (11), 2023 | | 2023 |
| Assessment of prediction uncertainty quantification methods in systems Biology A Fernandez Villaverde, JR Banga, E Raimúndez, J Hasenauer IEEE/ACM Transactions on Computational Biology and Bioinformatics: 15455963, 2023 | | 2023 |
| Posterior marginalization accelerates Bayesian inference for dynamical systems E Raimúndez, M Fedders, J Hasenauer bioRxiv, 2022.12. 02.518841, 2022 | | 2022 |
| Efficient Bayesian parameter estimation applied to mechanistic models of gastric cancer signaling E Raimúndez Álvarez Technische Universität München, 2022 | | 2022 |
