Follow
Siddharth Dey
Title
Cited by
Cited by
Year
Integrated genome and transcriptome sequencing of the same cell
SS Dey, L Kester, B Spanjaard, M Bienko, A van Oudenaarden
Nature Biotechnology 33, 285-289, 2015
5102015
Genome-wide maps of nuclear lamina interactions in single human cells
J Kind, L Pagie, SS de Vries, L Nahidiazar, SS Dey, M Bienko, Y Zhan, ...
Cell 163 (1), 134-147, 2015
4762015
Single-cell 5hmC sequencing reveals chromosome-wide cell-to-cell variability and enables lineage reconstruction
D Mooijman, SS Dey, JC Boisset, N Crosetto, A Van Oudenaarden
Nature biotechnology 34 (8), 852-856, 2016
1622016
Orthogonal control of expression mean and variance by epigenetic features at different genomic loci
SS Dey, JE Foley, P Limsirichai, DV Schaffer, AP Arkin
Molecular systems biology 11 (5), 806, 2015
1092015
Simultaneous quantification of protein–DNA contacts and transcriptomes in single cells
K Rooijers, CM Markodimitraki, FJ Rang, SS de Vries, A Chialastri, ...
Nature biotechnology 37, 766–772, 2019
1012019
Varying virulence: epigenetic control of expression noise and disease processes
K Miller-Jensen, SS Dey, DV Schaffer, AP Arkin
Trends in biotechnology 29 (10), 517-525, 2011
692011
Chromatin accessibility at the HIV LTR promoter sets a threshold for NF-κB mediated viral gene expression
K Miller-Jensen, SS Dey, N Pham, JE Foley, AP Arkin, DV Schaffer
Integrative Biology 4 (6), 661-671, 2012
362012
An extended culture system that supports human primordial germ cell-like cell survival and initiation of DNA methylation erasure
JJ Gell, W Liu, E Sosa, A Chialastri, G Hancock, Y Tao, SE Wamaitha, ...
Stem Cell Reports 14 (3), 433-446, 2020
352020
Efficient and cost-effective bacterial mRNA sequencing from low input samples through ribosomal RNA depletion
C Wangsanuwat, KA Heom, E Liu, MA O’Malley, SS Dey
BMC genomics 21, 1-12, 2020
262020
Simultaneous quantification of protein–DNA interactions and transcriptomes in single cells with scDam&T-seq
CM Markodimitraki, FJ Rang, K Rooijers, SS de Vries, A Chialastri, ...
Nature protocols 15 (6), 1922-1953, 2020
252020
Strand-specific single-cell methylomics reveals distinct modes of DNA demethylation dynamics during early mammalian development
M Sen, D Mooijman, A Chialastri, JC Boisset, M Popovic, B Heindryckx, ...
Nature Communications 12 (1), 1286, 2021
222021
Control over single-cell distribution of G1 lengths by WNT governs pluripotency
J Jang, D Han, M Golkaram, M Audouard, G Liu, D Bridges, S Hellander, ...
Plos Biology 17 (9), e3000453, 2019
142019
Quantitative evaluation and optimization of co-drugging to improve anti-HIV latency therapy
VC Wong, LE Fong, NM Adams, Q Xue, SS Dey, K Miller-Jensen
Cellular and molecular bioengineering 7, 320-333, 2014
122014
Mutual information analysis reveals coevolving residues in Tat that compensate for two distinct functions in HIV-1 gene expression
SS Dey, Y Xue, MP Joachimiak, GD Friedland, JC Burnett, Q Zhou, ...
Journal of Biological Chemistry 287 (11), 7945-7955, 2012
122012
A probabilistic framework for cellular lineage reconstruction using integrated single-cell 5-hydroxymethylcytosine and genomic DNA sequencing
C Wangsanuwat, A Chialastri, JF Aldeguer, NC Rivron, SS Dey
Cell reports methods 1 (4), 2021
82021
Opportunities for chemical engineering thermodynamics in biotechnology: some examples
SS Dey, JM Prausnitz
Industrial & Engineering Chemistry Research 50 (1), 3-15, 2011
62011
(1S*, 2S*, 4S*, 5S*)-Cyclohexane-1, 2, 4, 5-tetrol monohydrate
G Mehta, S Sen, S Dey
Acta Crystallographica Section C: Crystal Structure Communications 61 (6 …, 2005
52005
Optogenetic control of the integrated stress response reveals proportional encoding and the stress memory landscape
T Batjargal, F Zappa, RJ Grant, RA Piscopio, A Chialastri, SS Dey, ...
Cell Systems 14 (7), 551-562. e5, 2023
42023
(1R*, 2S*, 4S*, 5S*)-Cyclohexane-1, 2, 4, 5-tetrol
G Mehta, S Sen, S Dey
Acta Crystallographica Section E: Structure Reports Online 61 (4), o920-o922, 2005
42005
Combinatorial quantification of 5mC and 5hmC at individual CpG dyads and the transcriptome in single cells reveals modulators of DNA methylation maintenance fidelity
A Chialastri, S Sarkar, EE Schauer, S Lamba, SS Dey
bioRxiv, 2023
22023
The system can't perform the operation now. Try again later.
Articles 1–20