| Herb network construction and co-module analysis for uncovering the combination rule of traditional Chinese herbal formulae S Li, B Zhang, D Jiang, Y Wei, N Zhang BMC Bioinformatics 11, 1-12, 2010 | 298 | 2010 |
| TRIB2 acts downstream of Wnt/TCF in liver cancer cells to regulate YAP and C/EBPα function J Wang, JS Park, Y Wei, M Rajurkar, JL Cotton, Q Fan, BC Lewis, H Ji, ... Molecular Cell 51 (2), 211-225, 2013 | 180 | 2013 |
| Gata6 potently initiates reprograming of pluripotent and differentiated cells to extraembryonic endoderm stem cells SE Wamaitha, I Del Valle, LTY Cho, Y Wei, NME Fogarty, P Blakeley, ... Genes & Development 29 (12), 1239-1255, 2015 | 125 | 2015 |
| Kruppel-like factor-9 (KLF9) inhibits glioblastoma stemness through global transcription repression and integrin α6 inhibition M Ying, J Tilghman, Y Wei, H Guerrero-Cazares, A Quinones-Hinojosa, ... Journal of Biological Chemistry 289 (47), 32742-32756, 2014 | 80 | 2014 |
| Batch effects correction for microbiome data with Dirichlet-multinomial regression Z Dai, SH Wong, J Yu, Y Wei Bioinformatics 35 (5), 807-814, 2019 | 41 | 2019 |
| Joint analysis of differential gene expression in multiple studies using correlation motifs Y Wei, T Tenzen, H Ji Biostatistics 16 (1), 31-46, 2015 | 41 | 2015 |
| Outlier analysis defines zinc finger gene family DNA methylation in tumors and saliva of head and neck cancer patients DA Gaykalova, R Vatapalli, Y Wei, HL Tsai, H Wang, C Zhang, ... PloS One 10 (11), e0142148, 2015 | 39 | 2015 |
| Detection of cell-type-specific risk-CpG sites in epigenome-wide association studies X Luo, C Yang, Y Wei Nature Communications 10 (1), 3113, 2019 | 31 | 2019 |
| Deep autoencoder for interpretable tissue-adaptive deconvolution and cell-type-specific gene analysis Y Chen, Y Wang, Y Chen, Y Cheng, Y Wei, Y Li, J Wang, Y Wei, TF Chan, ... Nature Communications 13 (1), 6735, 2022 | 27 | 2022 |
| iASeq: integrative analysis of allele-specificity of protein-DNA interactions in multiple ChIP-seq datasets Y Wei, X Li, Q Wang, H Ji BMC Genomics 13, 1-19, 2012 | 25 | 2012 |
| Integrative analyses of cancer data: a review from a statistical perspective Y Wei Cancer Informatics 14, CIN. S17303, 2015 | 23 | 2015 |
| Flexible experimental designs for valid single-cell RNA-sequencing experiments allowing batch effects correction F Song, GMA Chan, Y Wei Nature Communications 11 (3274), 1-15, 2020 | 22 | 2020 |
| Batch effects correction with unknown subtypes X Luo, Y Wei Journal of the American Statistical Association, 2018 | 21 | 2018 |
| Outlier analysis and top scoring pair for integrated data analysis and biomarker discovery MF Ochs, JE Farrar, M Considine, Y Wei, S Meshinchi, RJ Arceci IEEE/ACM Transactions on Computational Biology and Bioinformatics 11 (3 …, 2013 | 20 | 2013 |
| Integrative computational analysis of transcriptional and epigenetic alterations implicates DTX1 as a putative tumor suppressor gene in HNSCC DA Gaykalova, V Zizkova, T Guo, I Tiscareno, Y Wei, R Vatapalli, ... Oncotarget 8 (9), 15349, 2017 | 19 | 2017 |
| Unique molecular characteristics of NAFLD-associated liver cancer accentuate β-catenin/TNFRSF19-mediated immune evasion AM Wong, X Ding, AM Wong, M Xu, L Zhang, HHW Leung, AWH Chan, ... Journal of Hepatology 77 (2), 410-423, 2022 | 16 | 2022 |
| Global mapping of transcription factor binding sites by sequencing chromatin surrogates: A perspective on experimental design, data analysis, and open problems Y Wei, G Wu, H Ji Statistics in biosciences 5, 156-178, 2013 | 7 | 2013 |
| Growth hormone releasing hormone signaling promotes Th17 cell differentiation and autoimmune inflammation L Du, BM Ho, L Zhou, YWY Yip, JN He, Y Wei, CC Tham, SO Chan, ... Nature Communications 14 (1), 3298, 2023 | 6 | 2023 |
| Joint analysis of mixed types of outcomes with latent variables D Pan, Y Wei, X Song Statistics in Medicine 40 (5), 1272-1284, 2021 | 6 | 2021 |
| Radiological Determinants of Complicated Immunoglobulin G4–Related Ophthalmic Disease: A Territory-Wide Cohort Study KKH Lai, WCW Chu, EYM Li, RYC Chan, Y Wei, R Jia, ACO Cheng, ... The Asia-Pacific Journal of Ophthalmology 11 (5), 417-424, 2022 | 5 | 2022 |
