| Alignment and integration of spatial transcriptomics data R Zeira, M Land, A Strzalkowski, BJ Raphael Nature Methods 19 (5), 567-575, 2022 | 92 | 2022 |
| STARCH: copy number and clone inference from spatial transcriptomics data R Elyanow, R Zeira, M Land, BJ Raphael Physical biology 18 (3), 035001, 2021 | 37 | 2021 |
| Complexity and algorithms for copy-number evolution problems M El-Kebir, BJ Raphael, R Shamir, R Sharan, S Zaccaria, M Zehavi, ... Algorithms for Molecular Biology 12, 1-11, 2017 | 36 | 2017 |
| Copy-number evolution problems: complexity and algorithms M El-Kebir, BJ Raphael, R Shamir, R Sharan, S Zaccaria, M Zehavi, ... International Workshop on Algorithms in Bioinformatics, 137-149, 2016 | 26 | 2016 |
| A linear-time algorithm for the copy number transformation problem R Shamir, M Zehavi, R Zeira 27th Annual Symposium on Combinatorial Pattern Matching (CPM 2016), 2016 | 16 | 2016 |
| Genome rearrangement problems with single and multiple gene copies: a review R Zeira, R Shamir Bioinformatics and Phylogenetics: Seminal Contributions of Bernard Moret …, 2019 | 15 | 2019 |
| Copy number evolution with weighted aberrations in cancer R Zeira, BJ Raphael Bioinformatics 36 (Supplement_1), i344-i352, 2020 | 14 | 2020 |
| A linear-time algorithm for the copy number transformation problem R Zeira, M Zehavi, R Shamir Journal of Computational Biology 24 (12), 1179-1194, 2017 | 14 | 2017 |
| Sorting cancer karyotypes using double-cut-and-joins, duplications and deletions R Zeira, R Shamir Bioinformatics 37 (11), 1489-1496, 2021 | 10 | 2021 |
| Sorting by cuts, joins, and whole chromosome duplications R Zeira, R Shamir Journal of Computational Biology 24 (2), 127-137, 2017 | 10 | 2017 |
| Partial alignment of multislice spatially resolved transcriptomics data X Liu, R Zeira, BJ Raphael Genome Research 33 (7), 1124-1132, 2023 | 6 | 2023 |
| PASTE2: Partial Alignment of Multi-slice Spatially Resolved Transcriptomics Data X Liu, R Zeira, BJ Raphael bioRxiv, 2023 | 3 | 2023 |
| Genome halving and aliquoting under the copy number distance R Zeira, G Mon, BJ Raphael 21st International Workshop on Algorithms in Bioinformatics (WABI 2021), 2021 | 3 | 2021 |
| HIPI: Spatially Resolved Multiplexed Protein Expression Inferred from H&E WSIs R Zeira, L Anavy, Z Yakhini, E Rivlin, D Freedman bioRxiv, 2024.03. 26.586744, 2024 | | 2024 |
| Models for Structural and Numerical Alterations in Cancer R Zeira Tel Aviv University, 2017 | | 2017 |
| Post-silicon Test Optimization Using Methods from Bioinformatics R Zeira Tel Aviv University, 2013 | | 2013 |
| Using computational biology methods to improve post-silicon microprocessor testing R Zeira, D Korchemny, R Shamir Hardware and Software: Verification and Testing: 7th International Haifa …, 2012 | | 2012 |
| Supplementary information for “Partial Alignment of Multi-slice Spatially Resolved Transcriptomics Data” X Liu, R Zeira, BJ Raphael | | |
| Finding Maximum Cohesion Subgraphs R Zeira, R Shamir 13th Haifa Workshop on Interdisciplinary Applications of Graph Theory …, 0 | | |
Ben RaphaelProfessor of Computer Science, Princeton UniversityVerified email at princeton.edu
