| A general deep hybrid model for bioreactor systems: combining First Principles with deep neural networks J Pinto, M Mestre, J Ramos, RS Costa, G Striedner, R Oliveira Computers & Chemical Engineering, 2022 | 20 | 2022 |
| Genome-scale modeling of Chinese hamster ovary cells by hybrid semi-parametric flux balance analysis JRC Ramos, GP Oliveira, P Dumas, R Oliveira Bioprocess and Biosystems Engineering, 2022 | 15 | 2022 |
| A dynamic model linking cell growth to intracellular metabolism and extracellular by‐product accumulation JRC Ramos, AG Rath, Y Genzel, V Sandig, U Reichl Biotechnology and Bioengineering 117 (5), 1533-1553, 2020 | 11 | 2020 |
| A General Hybrid Modeling Framework for Systems Biology Applications: Combining Mechanistic Knowledge with Deep Neural Networks under the SBML Standard J Pinto, JRC Ramos, RS Costa, R Oliveira AI 4 (1), 303-318, 2023 | 8 | 2023 |
| Application of hybrid neural models to bioprocesses: A systematic literature review R Agharafeie, R Oliveira, JRC Ramos, JM Mendes Authorea Preprints, 2023 | 6 | 2023 |
| Hybrid deep modeling of a CHO-K1 fed-batch process: combining First-Principles with deep neural networks J Pinto, JRC Ramos, RS Costa, S Rossell, P Dumas, R Oliveira Frontiers in Bioengineering and Biotechnology 11, 2023 | 5 | 2023 |
| Impact of Influenza A Virus Infection on Growth and Metabolism of Suspension MDCK Cells Using a Dynamic Model JRC Ramos, T Bissinger, Y Genzel, U Reichl Metabolites 12 (3), 239, 2022 | 4 | 2022 |
| SBML2HYB: a Python interface for SBML compatible hybrid modelling J Pinto, RS Costa, L Alexandre, JRC Ramos, R Oliveira Bioinformatics, 2023 | 3 | 2023 |
| From Shallow to Deep Bioprocess Hybrid Modeling: Advances and Future Perspectives R Agharafeie, JRC Ramos, JM Mendes, R Oliveira Fermentation, 2023 | 1 | 2023 |
| Hybrid Deep Modeling of a GS115 (Mut+) Pichia pastoris Culture with State-Space Reduction J Pinto, RS Costa, JRC Ramos, R Oliveira Fermentation 9 (7), 643, 2023 | 1 | 2023 |
| Deep hybrid modeling of a HEK293 process: Combining long short-term memory networks with first principles equations JRC Ramos, J Pinto, G Poiares-Oliveira, L Peeters, P Dumas, R Oliveira Biotechnology and Bioengineering, 1-15, 2024 | | 2024 |
| Deep hybrid modeling of a HEK293 process: combining Long Short-Term Memory (LSTM) networks with first principles equations JRC Ramos, J Pinto, G Poiares-Oliveira, L Peeters, P Dumas, R Oliveira Authorea Preprints, 2023 | | 2023 |
| Deep hybrid modeling of a HEK293 process: combining Long Short-Term Memory (LSTM) networks with first principles equations JRC Ramos, J Pinto, GP Oliveira, L Peeters, P Dumas, R Oliveira Authorea, 2023 | | 2023 |
| Application of hybrid neural models to bioprocesses: A systematic literature review R Agharafeie, R Oliveira, JRC Ramos, JM Mendes Authorea Preprints, 2023 | | 2023 |
| A General SBML Compatible Hybrid Modeling Framework: Combining Biochemical Mechanisms with Deep Neural Networks for Systems Biology Applications J Pinto, JRC Ramos, RS Costa, R Oliveira Preprints, 2023 | | 2023 |
| From Shallow to Deep Bioprocess Hybrid Modeling: Advances and Future Perspectives (preprint) R Agharafeie, JRC Ramos, JM Mendes, R Oliveira | | 2023 |
| Application of Hybrid Models in Biopharmaceutical Manufacturing R Agharafeie, JRC Ramos, R Oliveira, JM Mendes Chemie Ingenieur Technik 94 (9), 1281-1282, 2022 | | 2022 |
| Modeling and optimization of bioreactor processes J Pinto, J Antunes, J Ramos, RS Costa, R Oliveira Current Developments in Biotechnology and Bioengineering: Advances in …, 2022 | | 2022 |
| Impact of Influenza A Virus Infection on Growth and Metabolism of Suspension MDCK Cells Using a Dynamic Model. Metabolites 2022, 12, 239 JRC Ramos, T Bissinger, Y Genzel, U Reichl s Note: MDPI stays neutral with regard to jurisdictional claims in published …, 2022 | | 2022 |
| A Dynamic Model for Cell Growth, Metabolism & Virus Production of MDCK Suspension Cells J Rodrigues Correia Ramos, T Bissinger, Y Genzel, U Reichl YCOPE 2019, 2019 | | 2019 |
Rui OliveiraNOVA School of Science and Technology, Universidade Nova de LisboaVerified email at fct.unl.pt
