| Transcriptome analysis reveals dysregulation of innate immune response genes and neuronal activity-dependent genes in autism S Gupta, SE Ellis, FN Ashar, A Moes, JS Bader, J Zhan, AB West, ... Nature communications 5 (1), 5748, 2014 | 529 | 2014 |
| Reproducible RNA-seq analysis using recount2 L Collado-Torres, A Nellore, K Kammers, SE Ellis, MA Taub, KD Hansen, ... Nature biotechnology 35 (4), 319-321, 2017 | 382 | 2017 |
| Characterization of genetic loci that affect susceptibility to inflammatory bowel diseases in African Americans C Huang, T Haritunians, DT Okou, DJ Cutler, ME Zwick, KD Taylor, ... Gastroenterology 149 (6), 1575-1586, 2015 | 84 | 2015 |
| Cross-tissue integration of genetic and epigenetic data offers insight into autism spectrum disorder SV Andrews, SE Ellis, KM Bakulski, B Sheppard, LA Croen, ... Nature communications 8 (1), 1011, 2017 | 82 | 2017 |
| Transcriptome analysis of cortical tissue reveals shared sets of downregulated genes in autism and schizophrenia SE Ellis, R Panitch, AB West, DE Arking Translational psychiatry 6 (5), e817-e817, 2016 | 65 | 2016 |
| Teaching creative and practical data science at scale T Donoghue, B Voytek, SE Ellis Journal of Statistics and Data Science Education 29 (sup1), S27-S39, 2021 | 61 | 2021 |
| Improving the value of public RNA-seq expression data by phenotype prediction SE Ellis, L Collado-Torres, A Jaffe, JT Leek Nucleic acids research 46 (9), e54-e54, 2018 | 53 | 2018 |
| Exaggerated CpH methylation in the autism-affected brain SE Ellis, S Gupta, A Moes, AB West, DE Arking Molecular Autism 8, 1-8, 2017 | 47 | 2017 |
| RNA-Seq optimization with eQTL gold standards SE Ellis, S Gupta, FN Ashar, JS Bader, AB West, DE Arking BMC genomics 14, 1-11, 2013 | 31 | 2013 |
| How to share data for collaboration SE Ellis, JT Leek The American Statistician 72 (1), 53-57, 2018 | 27 | 2018 |
| Biomarkers of recent cannabis use in blood, oral fluid and breath JA Hubbard, MA Hoffman, SE Ellis, PM Sobolesky, BE Smith, ... Journal of analytical toxicology 45 (8), 820-828, 2021 | 24 | 2021 |
| Integrated transcriptomic and proteomic analysis of primary human umbilical vein endothelial cells AK Madugundu, CH Na, RS Nirujogi, S Renuse, KP Kim, KH Burns, ... Proteomics 19 (15), 1800315, 2019 | 17 | 2019 |
| Blood and oral fluid cannabinoid profiles of frequent and occasional cannabis smokers MA Hoffman, JA Hubbard, PM Sobolesky, BE Smith, RT Suhandynata, ... Journal of Analytical Toxicology 45 (8), 851-862, 2021 | 14 | 2021 |
| Driving under the influence of cannabis: impact of combining toxicology testing with field sobriety tests RL Fitzgerald, A Umlauf, JA Hubbard, MA Hoffman, PM Sobolesky, ... Clinical chemistry 69 (7), 724-733, 2023 | 8 | 2023 |
| recount: A large-scale resource of analysis-ready RNA-seq expression data L Collado-Torres, A Nellore, K Kammers, SE Ellis, MA Taub, KD Hansen, ... bioRxiv, 068478, 2016 | 8 | 2016 |
| The challenges of evolving technical courses at scale: Four case studies of updating large data science courses S Lau, J Eldridge, S Ellis, A Fraenkel, M Langlois, S Rampure, ... Proceedings of the Ninth ACM Conference on Learning@ Scale, 201-211, 2022 | 7 | 2022 |
| recount-brain: a curated repository of human brain RNA-seq datasets metadata A Razmara, SE Ellis, DJ Sokolowski, S Davis, MD Wilson, JT Leek, ... BioRxiv, 618025, 2019 | 7 | 2019 |
| Course Materials for Data Science in Practice T Donoghue, B Voytek, S Ellis Journal of Open Source Education 5 (51), 121, 2022 | 2 | 2022 |
| recount_brain cross-study example SE Ellis | | 2018 |
| How to share data for collaboration. J Leek, S Ellis American Statistician 72 (1), 2018 | | 2018 |
