| Microbial community transcriptional networks are conserved in three domains at ocean basin scales FO Aylward, JM Eppley, JM Smith, FP Chavez, CA Scholin, EF DeLong Proceedings of the National Academy of Sciences 112 (17), 5443-5448, 2015 | 172 | 2015 |
| Diverse, uncultivated bacteria and archaea underlying the cycling of dissolved protein in the ocean WD Orsi, JM Smith, S Liu, Z Liu, CM Sakamoto, S Wilken, C Poirier, ... The ISME journal 10 (9), 2158-2173, 2016 | 131 | 2016 |
| Ammonium uptake by phytoplankton regulates nitrification in the sunlit ocean JM Smith, FP Chavez, CA Francis PloS one 9 (9), e108173, 2014 | 122 | 2014 |
| Ecophysiology of uncultivated marine euryarchaea is linked to particulate organic matter WD Orsi, JM Smith, HM Wilcox, JE Swalwell, P Carini, AZ Worden, ... The ISME journal 9 (8), 1747-1763, 2015 | 100 | 2015 |
| Genetic and functional variation in denitrifier populations along a short-term restoration chronosequence JM Smith, A Ogram Applied and Environmental Microbiology 74 (18), 5615-5620, 2008 | 94 | 2008 |
| Differential contributions of archaeal ammonia oxidizer ecotypes to nitrification in coastal surface waters JM Smith, KL Casciotti, FP Chavez, CA Francis The ISME journal 8 (8), 1704-1714, 2014 | 89 | 2014 |
| Measurements of nitrite production in and around the primary nitrite maximum in the central California Current. AE Santoro, CM Sakamoto, JM Smith, JN Plant, AL Gehman, AZ Worden, ... Biogeosciences 10 (11), 2013 | 84 | 2013 |
| Diversity, abundance and expression of nitrite reductase (nirK)-like genes in marine thaumarchaea MB Lund, JM Smith, CA Francis The ISME Journal, 2012 | 73 | 2012 |
| Factors influencing nitrification rates and the abundance and transcriptional activity of ammonia‐oxidizing microorganisms in the dark northeast P acific O cean JM Smith, J Damashek, FP Chavez, CA Francis Limnology and Oceanography 61 (2), 596-609, 2016 | 66 | 2016 |
| Shifts in methanogen community structure and function associated with long‐term manipulation of sulfate and salinity in a hypersaline microbial mat JM Smith, SJ Green, CA Kelley, L Prufert‐Bebout, BM Bebout Environmental Microbiology 10 (2), 386-394, 2008 | 60 | 2008 |
| Spatiotemporal relationships between the abundance, distribution, and potential activities of ammonia-oxidizing and denitrifying microorganisms in intertidal sediments JM Smith, AC Mosier, CA Francis Microbial ecology 69 (1), 13-24, 2015 | 53 | 2015 |
| Responses of ammonia-oxidizing bacterial and archaeal populations to organic nitrogen amendments in low-nutrient groundwater DW Reed, JM Smith, CA Francis, Y Fujita Applied and Environmental Microbiology 76 (8), 2517-2523, 2010 | 46 | 2010 |
| Differential co-occurrence relationships shaping ecotype diversification within Thaumarchaeota populations in the coastal ocean water column L Reji, BB Tolar, JM Smith, FP Chavez, CA Francis The ISME journal 13 (5), 1144-1158, 2019 | 40 | 2019 |
| Benthic Ammonia Oxidizers Differ in Community Structure and Biogeochemical Potential Across a Riverine Delta J Damashek, JM Smith, A Mosier, C Francis Frontiers in Microbiology 5, 743, 2015 | 39 | 2015 |
| Structure and function of methanogens along a short-term restoration chronosequence in the Florida Everglades JM Smith, H Castro, A Ogram Applied and environmental microbiology 73 (13), 4135-4141, 2007 | 35 | 2007 |
| Transcriptomic evidence for microbial sulfur cycling in the eastern tropical North Pacific oxygen minimum zone MT Carolan, JM Smith, JM Beman Frontiers in Microbiology 6, 334, 2015 | 30 | 2015 |
| Cyanobacterial Distributions along a Physico‐chemical Gradient in the Northeastern Pacific Ocean S Sudek, RC Everroad, ALM Gehman, JM Smith, CL Poirier, FP Chavez, ... Environmental microbiology, 2015 | 27 | 2015 |
| Impact of recently upwelled water on productivity investigated using in situ and incubation‐based methods in M onterey B ay CC Manning, RHR Stanley, DP Nicholson, JM Smith, ... Journal of Geophysical Research: Oceans 122 (3), 1901-1926, 2017 | 17 | 2017 |
| Urea as a source of nitrogen to giant kelp (Macrocystis pyrifera) JM Smith, MA Brzezinski, JM Melack, RJ Miller, DC Reed Limnology and Oceanography Letters 3 (4), 365-373, 2018 | 14 | 2018 |
| Depth distributions of nitrite reductase (nirK) gene variants reveal spatial dynamics of thaumarchaeal ecotype populations in coastal Monterey Bay L Reji, BB Tolar, JM Smith, FP Chavez, CA Francis Environmental microbiology 21 (11), 4032-4045, 2019 | 12 | 2019 |
