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Juan R. Perilla
Juan R. Perilla
Associate Professor of Chemistry and Biochemistry, University of Delaware
Dirección de correo verificada de udel.edu - Página principal
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Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics
G Zhao, JR Perilla, EL Yufenyuy, X Meng, B Chen, J Ning, J Ahn, ...
Nature 497 (7451), 643-646, 2013
9212013
Molecular dynamics simulations of large macromolecular complexes
JR Perilla, BC Goh, CK Cassidy, B Liu, RC Bernardi, T Rudack, H Yu, ...
Current opinion in structural biology 31, 64-74, 2015
4352015
Inositol phosphates are assembly co-factors for HIV-1
RA Dick, KK Zadrozny, C Xu, FKM Schur, TD Lyddon, CL Ricana, ...
Nature 560 (7719), 509-512, 2018
2092018
Physical properties of the HIV-1 capsid from all-atom molecular dynamics simulations
JR Perilla, K Schulten
Nature communications 8 (1), 1-10, 2017
1712017
Cyclophilin A stabilizes the HIV-1 capsid through a novel non-canonical binding site
C Liu, JR Perilla, J Ning, M Lu, G Hou, R Ramalho, BA Himes, G Zhao, ...
Nature communications 7 (1), 10714, 2016
1682016
Zipping and unzipping of adenylate kinase: atomistic insights into the ensemble of open↔ closed transitions
O Beckstein, EJ Denning, JR Perilla, TB Woolf
Journal of molecular biology 394 (1), 160-176, 2009
1532009
CryoEM and computer simulations reveal a novel kinase conformational switch in bacterial chemotaxis signaling
CK Cassidy, BA Himes, FJ Alvarez, J Ma, G Zhao, JR Perilla, K Schulten, ...
Elife 4, e08419, 2015
1182015
All-atom molecular dynamics of virus capsids as drug targets
JR Perilla, JA Hadden, BC Goh, CG Mayne, K Schulten
The journal of physical chemistry letters 7 (10), 1836-1844, 2016
922016
Ictal propagation of high frequency activity is recapitulated in interictal recordings: effective connectivity of epileptogenic networks recorded with intracranial EEG
A Korzeniewska, MC Cervenka, CC Jouny, JR Perilla, J Harezlak, ...
Neuroimage 101, 96-113, 2014
922014
All-atom molecular dynamics of the HBV capsid reveals insights into biological function and cryo-EM resolution limits
JA Hadden, JR Perilla, CJ Schlicksup, B Venkatakrishnan, A Zlotnick, ...
Elife 7, e32478, 2018
912018
Dynamic allostery governs cyclophilin A–HIV capsid interplay
M Lu, G Hou, H Zhang, CL Suiter, J Ahn, IJL Byeon, JR Perilla, ...
Proceedings of the National Academy of Sciences 112 (47), 14617-14622, 2015
852015
FEZ1 is recruited to a conserved cofactor site on capsid to promote HIV-1 trafficking
PT Huang, BJ Summers, C Xu, JR Perilla, V Malikov, MH Naghavi, ...
Cell reports 28 (9), 2373-2385. e7, 2019
672019
Molecular architecture of the retroviral capsid
JR Perilla, AM Gronenborn
Trends in biochemical sciences 41 (5), 410-420, 2016
662016
Atomic-resolution structure of HIV-1 capsid tubes by magic-angle spinning NMR
M Lu, RW Russell, AJ Bryer, CM Quinn, G Hou, H Zhang, CD Schwieters, ...
Nature structural & molecular biology 27 (9), 863-869, 2020
612020
Dynamic regulation of HIV-1 capsid interaction with the restriction factor TRIM5α identified by magic-angle spinning NMR and molecular dynamics simulations
CM Quinn, M Wang, MP Fritz, B Runge, J Ahn, C Xu, JR Perilla, ...
Proceedings of the National Academy of Sciences 115 (45), 11519-11524, 2018
582018
Quenching protein dynamics interferes with HIV capsid maturation
M Wang, CM Quinn, JR Perilla, H Zhang, R Shirra Jr, G Hou, IJ Byeon, ...
Nature Communications 8 (1), 1779, 2017
572017
CryoEM structure of MxB reveals a novel oligomerization interface critical for HIV restriction
FJD Alvarez, S He, JR Perilla, S Jang, K Schulten, AN Engelman, ...
Science advances 3 (9), e1701264, 2017
562017
HIV-1 capsid function is regulated by dynamics: Quantitative atomic-resolution insights by integrating magic-angle-spinning NMR, QM/MM, and MD
H Zhang, G Hou, M Lu, J Ahn, IJL Byeon, CJ Langmead, JR Perilla, ...
Journal of the American Chemical Society 138 (42), 14066-14075, 2016
532016
Computing ensembles of transitions from stable states: Dynamic importance sampling
JR Perilla, O Beckstein, EJ Denning, TB Woolf
Journal of computational chemistry 32 (2), 196-209, 2011
522011
Permeability of the HIV-1 capsid to metabolites modulates viral DNA synthesis
C Xu, DK Fischer, S Rankovic, W Li, RA Dick, B Runge, R Zadorozhnyi, ...
PLoS biology 18 (12), e3001015, 2020
462020
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