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Brennan Nichyporuk
Brennan Nichyporuk
Research Scientist, Mila
Verified email at mila.quebec
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Year
Common limitations of image processing metrics: A picture story
A Reinke, MD Tizabi, CH Sudre, M Eisenmann, T Rädsch, M Baumgartner, ...
arXiv preprint arXiv:2104.05642, 2021
1472021
Metrics reloaded: Pitfalls and recommendations for image analysis validation
L Maier-Hein, B Menze
arXiv. org, 2022
130*2022
Accounting for variance in machine learning benchmarks
X Bouthillier, P Delaunay, M Bronzi, A Trofimov, B Nichyporuk, J Szeto, ...
Proceedings of Machine Learning and Systems 3, 747-769, 2021
1302021
Understanding metric-related pitfalls in image analysis validation
A Reinke, MD Tizabi, M Baumgartner, M Eisenmann, D Heckmann-Nötzel, ...
Nature methods, 1-13, 2024
232024
Biomedical image analysis competitions: The state of current participation practice
M Eisenmann, A Reinke, V Weru, MD Tizabi, F Isensee, TJ Adler, ...
arXiv preprint arXiv:2212.08568, 2022
232022
Had-net: A hierarchical adversarial knowledge distillation network for improved enhanced tumour segmentation without post-contrast images
S Vadacchino, R Mehta, NM Sepahvand, B Nichyporuk, JJ Clark, T Arbel
Medical Imaging with Deep Learning, 787-801, 2021
182021
Metrics reloaded-a new recommendation framework for biomedical image analysis validation
A Reinke, L Maier-Hein, E Christodoulou, B Glocker, P Scholz, F Isensee, ...
Medical imaging with deep learning, 2022
122022
Metrics reloaded: Pitfalls and recommendations for image analysis validation. 2022
L Maier-Hein, A Reinke, P Godau, MD Tizabi, F Büttner, E Christodoulou, ...
arXiv preprint arXiv:2206.01653, 2023
92023
Estimating individual treatment effect on disability progression in multiple sclerosis using deep learning
JPR Falet, J Durso-Finley, B Nichyporuk, J Schroeter, F Bovis, ...
Nature communications 13 (1), 5645, 2022
92022
Counterfactual image synthesis for discovery of personalized predictive image markers
A Kumar, A Hu, B Nichyporuk, JPR Falet, DL Arnold, S Tsaftaris, T Arbel
MICCAI Workshop on Medical Image Assisted Blomarkers' Discovery, 113-124, 2022
72022
Information gain sampling for active learning in medical image classification
R Mehta, C Shui, B Nichyporuk, T Arbel
International Workshop on Uncertainty for Safe Utilization of Machine …, 2022
72022
Personalized prediction of future lesion activity and treatment effect in multiple sclerosis from baseline MRI
J Durso-Finley, JP Falet, B Nichyporuk, A Douglas, T Arbel
International Conference on Medical Imaging with Deep Learning, 387-406, 2022
62022
Rethinking generalization: the impact of annotation style on medical image segmentation
B Nichyporuk, J Cardinell, J Szeto, R Mehta, JPR Falet, DL Arnold, ...
arXiv preprint arXiv:2210.17398, 2022
62022
Optimizing operating points for high performance lesion detection and segmentation using lesion size reweighting
B Nichyporuk, J Szeto, DL Arnold, T Arbel
arXiv preprint arXiv:2107.12978, 2021
62021
Cohort bias adaptation in aggregated datasets for lesion segmentation
B Nichyporuk, J Cardinell, J Szeto, R Mehta, S Tsaftaris, DL Arnold, ...
Domain Adaptation and Representation Transfer, and Affordable Healthcare and …, 2021
42021
Debiasing counterfactuals in the presence of spurious correlations
A Kumar, N Fathi, R Mehta, B Nichyporuk, JPR Falet, S Tsaftaris, T Arbel
Workshop on Clinical Image-Based Procedures, 276-286, 2023
22023
Engineering deep learning systems for robust and accurate focal pathology segmentation and detection
B Nichyporuk
McGill University (Canada), 2021
22021
Clinically Plausible Pathology-Anatomy Disentanglement in Patient Brain MRI with Structured Variational Priors
A Hu, JPR Falet, BS Nichyporuk, C Shui, DL Arnold, SA Tsaftaris, T Arbel
arXiv preprint arXiv:2211.07820, 2022
12022
Consensus learning with multi-rater labels for segmenting and detecting new lesions
B Nichyporuk, K Vasilevski, A Hu, C Myers-Colet, J Cardinell, J Szeto, ...
MSSEG-2 challenge proceedings: Multiple sclerosis new lesions segmentation …, 2021
12021
HyperFusion: A Hypernetwork Approach to Multimodal Integration of Tabular and Medical Imaging Data for Predictive Modeling
D Duenias, B Nichyporuk, T Arbel, TR Raviv
arXiv preprint arXiv:2403.13319, 2024
2024
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