| Rich microbial and depolymerising diversity in Antarctic krill gut L Möller, Y Vainshtein, B Meyer, J Neidhardt, AM Eren, K Sohn, R Rabus Microbiology Spectrum 12 (4), e04035-23, 2024 | | 2024 |
| Diverse plasmid systems and their ecology across human gut metagenomes revealed by PlasX and MobMess MK Yu, EC Fogarty, AM Eren Nature Microbiology, 1-18, 2024 | 11* | 2024 |
| A cryptic plasmid is among the most numerous genetic elements in the human gut EC Fogarty, MS Schechter, K Lolans, ML Sheahan, I Veseli, RM Moore, ... Cell 187 (5), 1206-1222. e16, 2024 | 1 | 2024 |
| Bile acid fitness determinants of a Bacteroides fragilis isolate from a human pouchitis patient A Fiebig, MK Schnizlein, S Pena-Rivera, F Trigodet, AA Dubey, ... Mbio 15 (1), e02830-23, 2024 | 1* | 2024 |
| Dietary-and host-derived metabolites are used by diverse gut bacteria for anaerobic respiration AS Little, IT Younker, MS Schechter, PN Bernardino, R Méheust, ... Nature Microbiology, 1-15, 2024 | 5* | 2024 |
| Digital Microbe: A Genome-Informed Data Integration Framework for Collaborative Research on Emerging Model Organisms I Veseli, ZS Cooper, MA DeMers, MS Schechter, S Miller, L Weber, ... bioRxiv, 2024.01. 16.575828, 2024 | | 2024 |
| Metabolic independence drives gut microbial colonization and resilience in health and disease AR Watson, J Füssel, I Veseli, JZ DeLongchamp, M Silva, F Trigodet, ... Genome Biology 24 (1), 1-21, 2023 | 42* | 2023 |
| Microbial-enrichment method enables high-throughput metagenomic characterization from host-rich samples NJ Wu-Woods, JT Barlow, F Trigodet, DG Shaw, AE Romano, B Jabri, ... Nature Methods 20 (11), 1672-1682, 2023 | 2 | 2023 |
| Multiple Wolbachia subpopulations co-occur in single Culex pipiens mosquito organs H Schrieke, O Duron, B Trouche, AM Eren, J Reveillaud | | 2023 |
| Species-specific responses of marine bacteria to environmental perturbation TD Peña-Montenegro, S Kleindienst, AE Allen, AM Eren, JP McCrow, ... ISME communications 3 (1), 99, 2023 | 1 | 2023 |
| Transient Suppression of Bacterial Populations Associated with Gut Health is Critical in Success of Exclusive Enteral Nutrition for Children with Crohn’s Disease J Runde, I Veseli, EC Fogarty, AR Watson, Q Clayssen, M Yosef, ... Journal of Crohn's and Colitis 17 (7), 1103-1113, 2023 | 2 | 2023 |
| pWCP is a widely distributed and highly conserved Wolbachia plasmid in Culex pipiens and Culex quinquefasciatus mosquitoes worldwide A Ghousein, J Tutagata, H Schrieke, M Etienne, V Chaumeau, S Boyer, ... ISME communications 3 (1), 40, 2023 | 1 | 2023 |
| Structure-informed microbial population genetics elucidate selective pressures that shape protein evolution E Kiefl, OC Esen, SE Miller, KL Kroll, AD Willis, MS Rappé, T Pan, ... Science Advances 9 (8), eabq4632, 2023 | 10 | 2023 |
| A 2-million-year-old microbial and viral communities from the Kap København Formation in North Greenland A Fernandez-Guerra, G Borrel, TO Delmont, B Elberling, AM Eren, ... bioRxiv, 2023.06. 10.544454, 2023 | 2 | 2023 |
| Microbes with higher metabolic independence are enriched in human gut microbiomes under stress I Veseli, YT Chen, MS Schechter, C Vanni, EC Fogarty, AR Watson, ... bioRxiv, 2023.05. 10.540289, 2023 | 8 | 2023 |
| A highly conserved and globally prevalent cryptic plasmid is among the most numerous mobile genetic elements in the human gut EC Fogarty, MS Schechter, K Lolans, ML Sheahan, I Veseli, R Moore, ... bioRxiv, 2023.03. 25.534219, 2023 | 2 | 2023 |
| A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome P Chitale, AD Lemenze, EC Fogarty, A Shah, C Grady, AR Odom-Mabey, ... Nature communications 13 (1), 7068, 2022 | 9 | 2022 |
| The Diversity and Functional Capacity of Microbes Associated with Coastal Macrophytes K Miranda, BL Weigel, EC Fogarty, IA Veseli, AE Giblin, AM Eren, ... Msystems 7 (5), e00592-22, 2022 | 9 | 2022 |
| Guts of the Urban Ecosystem: Microbial Ecology of Sewer Infrastructure A Roguet, RJ Newton, AM Eren, SL McLellan Msystems 7 (4), e00118-22, 2022 | 7 | 2022 |
| High molecular weight DNA extraction strategies for long‐read sequencing of complex metagenomes F Trigodet, K Lolans, E Fogarty, A Shaiber, HG Morrison, L Barreiro, ... Molecular Ecology Resources 22 (5), 1786-1802, 2022 | 32 | 2022 |
Tom O. DelmontCNRS - Genoscope - TARA anvi-OceansVerified email at genoscope.cns.fr
