| The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ... Cell 181 (2), 236-249, 2020 | 375 | 2020 |
| Immune cell gene signatures for profiling the microenvironment of solid tumors AJ Nirmal, T Regan, BB Shih, DA Hume, AH Sims, TC Freeman Cancer immunology research 6 (11), 1388-1400, 2018 | 172 | 2018 |
| MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging D Schapiro, A Sokolov, C Yapp, YA Chen, JL Muhlich, J Hess, ... Nature methods 19 (3), 311-315, 2022 | 119 | 2022 |
| The spatial landscape of progression and immunoediting in primary melanoma at single-cell resolution AJ Nirmal, Z Maliga, T Vallius, B Quattrochi, AA Chen, CA Jacobson, ... Cancer Discovery 12 (6), 1518-1541, 2022 | 101 | 2022 |
| Macrophage colony-stimulating factor increases hepatic macrophage content, liver growth, and lipid accumulation in neonatal rats C Pridans, KA Sauter, KM Irvine, GM Davis, L Lefevre, A Raper, R Rojo, ... American Journal of Physiology-Gastrointestinal and Liver Physiology 314 (3 …, 2018 | 35 | 2018 |
| Peptide vaccine therapy in colorectal cancer A Bartnik, AJ Nirmal, SY Yang Vaccines 1 (1), 1-16, 2013 | 35 | 2013 |
| Continuous biomarker assessment by exhaustive survival analysis DA Pearce, AJ Nirmal, TC Freeman, AH Sims BioRxiv, 208660, 2017 | 30 | 2017 |
| Transcriptomics analysis of porcine caudal dorsal root ganglia in tail amputated pigs shows long-term effects on many pain-associated genes DA Sandercock, MW Barnett, JE Coe, AC Downing, AJ Nirmal, ... Frontiers in veterinary science 6, 314, 2019 | 27 | 2019 |
| Lymphocyte networks are dynamic cellular communities in the immunoregulatory landscape of lung adenocarcinoma G Gaglia, ML Burger, CC Ritch, D Rammos, Y Dai, GE Crossland, ... Cancer Cell 41 (5), 871-886. e10, 2023 | 24 | 2023 |
| Derivation of marker gene signatures from human skin and their use in the interpretation of the transcriptional changes associated with dermatological disorders BB Shih, AJ Nirmal, DJ Headon, AN Akbar, NA Mabbott, TC Freeman The Journal of pathology 241 (5), 600-613, 2017 | 22 | 2017 |
| Immune cell gene signatures for profiling the microenvironment of solid tumors. Cancer Immunol. Res. 2018; 6: 1388–1400. doi: 10.1158/2326-6066 AJ Nirmal, T Regan, BB Shih, DA Hume, AH Sims, TC Freeman CIR-18-0342.[Abstract][CrossRef][Google Scholar], 0 | 20 | |
| Overcoming IMiD resistance in T-cell lymphomas through potent degradation of ZFP91 and IKZF1 W Wu, GM Nelson, R Koch, KA Donovan, RP Nowak, TB Heavican-Foral, ... Blood, The Journal of the American Society of Hematology 139 (13), 2024-2037, 2022 | 12 | 2022 |
| Multidimensional genome-wide analyses show accurate FVIII integration by ZFN in primary human cells J Sivalingam, D Kenanov, H Han, AJ Nirmal, WH Ng, SS Lee, ... Molecular Therapy 24 (3), 607-619, 2016 | 12 | 2016 |
| Visinity: Visual spatial neighborhood analysis for multiplexed tissue imaging data S Warchol, R Krueger, AJ Nirmal, G Gaglia, J Jessup, CC Ritch, J Hoffer, ... IEEE transactions on visualization and computer graphics 29 (1), 106-116, 2022 | 11 | 2022 |
| Multiplexed and reproducible high content screening of live and fixed cells using Dye Drop CE Mills, K Subramanian, M Hafner, M Niepel, L Gerosa, M Chung, ... Nature Communications 13 (1), 6918, 2022 | 9 | 2022 |
| Micro-region transcriptomics of fixed human tissue using Pick-Seq Z Maliga, AJ Nirmal, NG Ericson, SA Boswell, L U’Ren, R Podyminogin, ... BioRxiv, 2021.03. 18.431004, 2021 | 6 | 2021 |
| Multiplexed and reproducible high content screening of live and fixed cells using the Dye Drop method CE Mills, K Subramanian, M Hafner, M Niepel, L Gerosa, M Chung, ... bioRxiv, 2021.08. 27.457854, 2021 | 5 | 2021 |
| Freeman TC Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumors. Cancer Immunol. Res. 2018; 6: 1388–1400. doi: 10.1158/2326-6066 AJ Nirmal, T Regan, BB Shih, DA Hume, AH Sims CIR-18-0342.[Abstract][CrossRef][Google Scholar], 0 | 5 | |
| Multiplexed proteomics and imaging of resolving and lethal SARS-CoV-2 infection in the lung M Kalocsay, Z Maliga, AJ Nirmal, RJ Eisert, GA Bradshaw, IH Solomon, ... bioRxiv, 2020.10. 14.339952, 2020 | 4 | 2020 |
| Durable engraftment of genetically modified FVIII‐secreting autologous bone marrow stromal cells in the intramedullary microenvironment SS Lee, J Sivalingam, AJ Nirmal, WH Ng, I Kee, IC Song, CY Kiong, ... Journal of Cellular and Molecular Medicine 22 (7), 3698-3702, 2018 | 4 | 2018 |
Peter K. SorgerHarvard Medical SchoolVerified email at hms.harvard.edu
