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Gyu Rie Lee
Gyu Rie Lee
University of Washington, Institute for Protein Design
Verified email at uw.edu
Title
Cited by
Cited by
Year
Accurate prediction of protein structures and interactions using a three-track neural network
M Baek, F DiMaio, I Anishchenko, J Dauparas, S Ovchinnikov, GR Lee, ...
Science 373 (6557), 871-876, 2021
36312021
Prediction of protein structure and interaction by GALAXY protein modeling programs
WH Shin, GR Lee, L Heo, H Lee, C Seok
Bio Design 2 (1), 1-11, 2014
1972014
De novo design of luciferases using deep learning
AHW Yeh, C Norn, Y Kipnis, D Tischer, SJ Pellock, D Evans, P Ma, ...
Nature 614 (7949), 774-780, 2023
1882023
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
1682016
Generalized biomolecular modeling and design with RoseTTAFold All-Atom
R Krishna, J Wang, W Ahern, P Sturmfels, P Venkatesh, I Kalvet, GR Lee, ...
Science 384 (6693), eadl2528, 2024
1082024
Effective protein model structure refinement by loop modeling and overall relaxation
GR Lee, L Heo, C Seok
Proteins: Structure, Function, and Bioinformatics 84, 293-301, 2016
1082016
Protein loop modeling using a new hybrid energy function and its application to modeling in inaccurate structural environments
H Park, GR Lee, L Heo, C Seok
PloS one 9 (11), e113811, 2014
972014
GalaxyRefine2: simultaneous refinement of inaccurate local regions and overall protein structure
GR Lee, J Won, L Heo, C Seok
Nucleic acids research 47 (W1), W451-W455, 2019
952019
Galaxy7TM: flexible GPCR–ligand docking by structure refinement
GR Lee, C Seok
Nucleic acids research 44 (W1), W502-W506, 2016
482016
High‐accuracy refinement using Rosetta in CASP13
H Park, GR Lee, DE Kim, I Anishchenko, Q Cong, D Baker
Proteins: Structure, Function, and Bioinformatics 87 (12), 1276-1282, 2019
412019
Biophysical and functional characterization of Norrin signaling through Frizzled4
I Bang, HR Kim, AH Beaven, J Kim, SB Ko, GR Lee, W Kan, H Lee, W Im, ...
Proceedings of the National Academy of Sciences 115 (35), 8787-8792, 2018
392018
Accurate protein structure prediction: what comes next
C Seok, M Baek, M Steinegger, H Park, GR Lee, J Won
Biodesign 9 (3), 47-50, 2021
342021
An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12
C Keasar, LJ McGuffin, B Wallner, G Chopra, B Adhikari, D Bhattacharya, ...
Scientific reports 8 (1), 9939, 2018
232018
De novo design of high-affinity binders of bioactive helical peptides
S Vázquez Torres, PJY Leung, P Venkatesh, ID Lutz, F Hink, HH Huynh, ...
Nature 626 (7998), 435-442, 2024
202024
Simultaneous refinement of inaccurate local regions and overall structure in the CASP12 protein model refinement experiment
GR Lee, L Heo, C Seok
Proteins: Structure, Function, and Bioinformatics 86, 168-176, 2018
192018
Evaluating GPCR modeling and docking strategies in the era of deep learning-based protein structure prediction
S Lee, S Kim, GR Lee, S Kwon, H Woo, C Seok, H Park
Computational and Structural Biotechnology Journal 21, 158-167, 2023
182023
Benchmarking predictions of allostery in liver pyruvate kinase in CAGI4
Q Xu, Q Tang, P Katsonis, O Lichtarge, D Jones, S Bovo, G Babbi, ...
Human Mutation 38 (9), 1123-1131, 2017
182017
De novo design of high-affinity protein binders to bioactive helical peptides
SV Torres, PJY Leung, ID Lutz, P Venkatesh, JL Watson, F Hink, ...
Biorxiv, 2022.12. 10.519862, 2022
172022
Conformational sampling of flexible ligand-binding protein loops
GR Lee, WH Shin, HB Park, SM Shin, CO Seok
Bulletin of the Korean Chemical Society 33 (3), 770-774, 2012
172012
De novo protein design using the blueprint builder in Rosetta
L An, GR Lee
Current Protocols in Protein Science 102 (1), e116, 2020
152020
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Articles 1–20