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Yuan Xue
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A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Nature 583 (7817), 590-595, 2020
7332020
Activation of lysosomal function in the course of autophagy via mTORC1 suppression and autophagosome-lysosome fusion
J Zhou, SH Tan, V Nicolas, C Bauvy, ND Yang, J Zhang, Y Xue, ...
Cell research 23 (4), 508-523, 2013
4142013
Ageing hallmarks exhibit organ-specific temporal signatures
N Schaum, B Lehallier, O Hahn, R Pálovics, S Hosseinzadeh, SE Lee, ...
Nature 583 (7817), 596-602, 2020
3462020
Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris
Tabula Muris Consortium, ...
Nature 562 (7727), 367-372, 2018
175*2018
Self-assembling manifolds in single-cell RNA sequencing data
AJ Tarashansky, Y Xue, P Li, SR Quake, B Wang
Elife 8, e48994, 2019
592019
A single-parasite transcriptional atlas of Toxoplasma Gondii reveals novel control of antigen expression
Y Xue, TC Theisen, S Rastogi, A Ferrel, SR Quake, JC Boothroyd
Elife 9, e54129, 2020
572020
Single-cell analysis of Schistosoma mansoni identifies a conserved genetic program controlling germline stem cell fate
P Li, D Nanes Sarfati, Y Xue, X Yu, AJ Tarashansky, SR Quake, B Wang
Nature communications 12 (1), 485, 2021
382021
Differential Impacts on Host Transcription by ROP and GRA Effectors from the Intracellular Parasite Toxoplasma gondii
S Rastogi, Y Xue, SR Quake, JC Boothroyd
mBio 11 (3), 2020
262020
The murine transcriptome reveals global aging nodes with organ-specific phase and amplitude
N Schaum, B Lehallier, O Hahn, S Hosseinzadeh, SE Lee, R Sit, DP Lee, ...
Biorxiv, 662254, 2019
192019
The RpoE stress response pathway mediates reduction of the virulence of enteropathogenic Escherichia coli by zinc
Y Xue, J Osborn, A Panchal, JL Mellies
Applied and Environmental Microbiology 81 (11), 3766-3774, 2015
162015
Heterologous reporter expression in the planarian Schmidtea mediterranea through somatic mRNA transfection
RN Hall, U Weill, L Drees, S Leal-Ortiz, H Li, M Khariton, C Chai, Y Xue, ...
Cell Reports Methods 2 (10), 2022
132022
Single-cell profiling identifies ACE+ granuloma macrophages as a nonpermissive niche for intracellular bacteria during persistent Salmonella infection
THM Pham, Y Xue, SM Brewer, KE Bernstein, SR Quake, DM Monack
Science Advances 9 (1), eadd4333, 2023
72023
Temperature effect on polymerase fidelity
Y Xue, I Braslavsky, SR Quake
Journal of Biological Chemistry 297 (5), 2021
52021
Differential impacts on host transcription by ROP and GRA effectors from the intracellular parasite Toxoplasma gondii. mBio 11: e00182-20
S Rastogi, Y Xue, SR Quake, JC Boothroyd
52020
Single-cell analysis of Schistosoma mansoni reveals a conserved genetic program controlling germline stem cell fate
P Li, DN Sarfati, Y Xue, X Yu, AJ Tarashansky, SR Quake, B Wang
bioRxiv, 2020.07. 06.190033, 2020
22020
69MO 5-Hydroxymethycytosine analysis reveals stable epigenetic changes in tumor tissue that enable cfDNA cancer predictions
F Feng, Y Ning, Y Xue, V Friedl, D Hann, B Gibb, A Bergamaschi, G Guler, ...
Annals of Oncology 33, S573, 2022
12022
A single-parasite transcriptional landscape of asexual development in Toxoplasma gondii
Y Xue, TT Theisen, S Rastogi, A Ferrel, SR Quake, JC Boothroyd
bioRxiv, 2019
12019
Coordinated wound responses in a regenerative animal-algal photosymbiotic metaorganism
D Nanes Sarfati, Y Xue, ES Song, A Byrne, S Darmanis, SR Quake, ...
2023
The acoel Convolutrilba longifissura fuels up for regeneration through its algal symbionts
ND Sarfati, Y Xue, AL Byrne, D Le, S Darmanis, J Sikes, B Wang
INTEGRATIVE AND COMPARATIVE BIOLOGY 61, E645-E645, 2021
2021
Single-Cell Deconvolution of Host-Pathogen Interactions
Y Xue
Stanford University, 2021
2021
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Articles 1–20