MSM/RD: Coupling Markov state models of molecular kinetics with reaction-diffusion simulations M Dibak, MJ del Razo, D De Sancho, C Schütte, F Noé The Journal of chemical physics 148 (21), 214107, 2018 | 32 | 2018 |
Riemann problems and Jupyter solutions DI Ketcheson, RJ LeVeque, MJ Del Razo SIAM, 2020 | 24 | 2020 |
Multiscale molecular kinetics by coupling Markov state models and reaction-diffusion dynamics MJ Del Razo, M Dibak, C Schütte, F Noé The Journal of Chemical Physics 155 (12), 2021 | 18 | 2021 |
A probabilistic framework for particle-based reaction–diffusion dynamics using classical Fock space representations MJ Del Razo, D Frömberg, AV Straube, C Schütte, F Höfling, ... Letters in Mathematical Physics 112 (3), 49, 2022 | 16 | 2022 |
Grand canonical diffusion-influenced reactions: A stochastic theory with applications to multiscale reaction-diffusion simulations MJ Del Razo, H Qian, F Noé The Journal of chemical physics 149 (4), 2018 | 16 | 2018 |
A discrete stochastic formulation for reversible bimolecular reactions via diffusion encounter MJ Del Razo, H Qian Communications in Mathematical Sciences 14 (6), 1741-1772, 2015 | 16 | 2015 |
Independent Markov decomposition: Toward modeling kinetics of biomolecular complexes T Hempel, MJ Del Razo, CT Lee, BC Taylor, RE Amaro, F Noé Proceedings of the National Academy of Sciences 118 (31), e2105230118, 2021 | 15 | 2021 |
Coupling particle-based reaction-diffusion simulations with reservoirs mediated by reaction-diffusion PDEs M Kostré, C Schütte, F Noé, MJ Del Razo Multiscale Modeling & Simulation 19 (4), 1659-1683, 2021 | 15 | 2021 |
Computational and in vitro studies of blast-induced blood-brain barrier disruption MJ Del Razo, Y Morofuji, JS Meabon, BR Huber, ER Peskind, WA Banks, ... SIAM Journal on Scientific Computing 38 (3), B347-B374, 2016 | 14 | 2016 |
Chemical diffusion master equation: Formulations of reaction–diffusion processes on the molecular level MJ del Razo, S Winkelmann, R Klein, F Höfling Journal of Mathematical Physics 64 (1), 2023 | 10 | 2023 |
Computational study of shock waves propagating through air-plastic-water interfaces MJ Del Razo, RJ LeVeque Bulletin of the Brazilian Mathematical Society, New Series 47, 685-700, 2016 | 10 | 2016 |
Fluorescence correlation spectroscopy and nonlinear stochastic reaction–diffusion MJ Del Razo, W Pan, H Qian, G Lin The Journal of Physical Chemistry B 118 (25), 7037-7046, 2014 | 8 | 2014 |
Numerical methods for interface coupling of compressible and almost incompressible media MJ Del Razo, RJ LeVeque SIAM Journal on Scientific Computing 39 (3), B486-B507, 2017 | 6 | 2017 |
Solution formula for the general birth-death chemical diffusion master equation A Lanconelli, BT Perçin, MJ del Razo arXiv preprint arXiv:2302.10700, 2023 | 2 | 2023 |
Dynamics of systems with varying number of particles: from Liouville equations to general master equations for open systems MJ del Razo arXiv preprint arXiv:2403.14517, 2024 | 1 | 2024 |
Data-driven dynamical coarse-graining for condensed matter systems MJ Del Razo, D Crommelin, PG Bolhuis The Journal of Chemical Physics 160 (2), 2024 | 1 | 2024 |
Risk aversion promotes cooperation J Armas, W Merbis, J Meylahn, SR Rad, MJ del Razo arXiv preprint arXiv:2306.05971, 2023 | 1 | 2023 |
Open reaction-diffusion systems: bridging probabilistic theory across scales MJ del Razo arXiv preprint arXiv:2404.07119, 2024 | | 2024 |
Stochastic Modeling of Reversible Biochemical Reaction-Diffusion Systems and High-Resolution Shock-Capturing Methods for Fluid Interfaces MJ Del Razo Sarmina | | 2016 |
A Community-Driven Collection of Approximate Riemann Solvers for Hyperbolic Problems MJ Del Razo, D Ketcheson, RJ LeVeque | | |