| Harmonizing semantic annotations for computational models in biology ML Neal, M König, D Nickerson, G Mısırlı, R Kalbasi, A Dräger, K Atalag, ... Briefings in bioinformatics 20 (2), 540-550, 2019 | 66 | 2019 |
| Toward community standards and software for whole-cell modeling D Waltemath, JR Karr, FT Bergmann, V Chelliah, M Hucka, M Krantz, ... IEEE Transactions on Biomedical Engineering 63 (10), 2007-2014, 2016 | 64 | 2016 |
| Systems biology graphical notation: process description language level 1 version 2.0 A Rougny, V Touré, S Moodie, I Balaur, T Czauderna, H Borlinghaus, ... Journal of integrative bioinformatics 16 (2), 20190022, 2019 | 53 | 2019 |
| A national, semantic-driven, three-pillar strategy to enable health data secondary usage interoperability for research within the Swiss personalized health network … C Gaudet-Blavignac, JL Raisaro, V Touré, S Österle, K Crameri, C Lovis JMIR Medical Informatics 9 (6), e27591, 2021 | 33 | 2021 |
| CausalTAB: the PSI-MITAB 2.8 updated format for signalling data representation and dissemination L Perfetto, ML Acencio, G Bradley, G Cesareni, N Del Toro, D Fazekas, ... Bioinformatics 35 (19), 3779-3785, 2019 | 31 | 2019 |
| STON: exploring biological pathways using the SBGN standard and graph databases V Touré, A Mazein, D Waltemath, I Balaur, M Saqi, R Henkel, J Pellet, ... BMC bioinformatics 17, 1-9, 2016 | 22 | 2016 |
| Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC] 2 2019 CoLoMoTo/SysMod Workshop A Niarakis, M Kuiper, M Ostaszewski, RS Malik Sheriff, C Casals-Casas, ... Briefings in bioinformatics 22 (2), 1848-1859, 2021 | 20 | 2021 |
| Systems biology graphical notation markup language (SBGNML) version 0.3 FT Bergmann, T Czauderna, U Dogrusoz, A Rougny, A Dräger, V Touré, ... Journal of integrative bioinformatics 17 (2-3), 20200016, 2020 | 20 | 2020 |
| The minimum information about a molecular interaction causal statement (MI2CAST) V Touré, S Vercruysse, ML Acencio, RC Lovering, S Orchard, G Bradley, ... Bioinformatics 36 (24), 5712-5718, 2020 | 19 | 2020 |
| The status of causality in biological databases: data resources and data retrieval possibilities to support logical modeling V Touré, Å Flobak, A Niarakis, S Vercruysse, M Kuiper Briefings in bioinformatics 22 (4), bbaa390, 2021 | 17 | 2021 |
| A middle-out modeling strategy to extend a colon cancer logical model improves drug synergy predictions in epithelial-derived cancer cell lines E Tsirvouli, V Touré, B Niederdorfer, M Vázquez, Å Flobak, M Kuiper Frontiers in molecular biosciences 7, 502573, 2020 | 13 | 2020 |
| Strategies to enhance logic modeling-based cell line-specific drug synergy prediction B Niederdorfer, V Touré, M Vazquez, L Thommesen, M Kuiper, A Lægreid, ... Frontiers in physiology 11, 535773, 2020 | 12 | 2020 |
| SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks A Rougny, V Touré, J Albanese, D Waltemath, D Shirshov, A Sorokin, ... Briefings in bioinformatics 22 (5), bbab049, 2021 | 8 | 2021 |
| The systems biology graphical notation: Current status and applications in systems medicine V Touré, A Dräger, A Luna, U Dogrusoz, A Rougny Elsevier, 2020 | 8 | 2020 |
| Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation V Touré, N Le Novère, D Waltemath, O Wolkenhauer PLoS Computational Biology 14 (2), e1005740, 2018 | 8 | 2018 |
| FAIRification of health-related data using semantic web technologies in the Swiss Personalized Health Network V Touré, P Krauss, K Gnodtke, J Buchhorn, D Unni, P Horki, JL Raisaro, ... Scientific Data 10 (1), 127, 2023 | 7 | 2023 |
| CausalBuilder: bringing the MI2CAST causal interaction annotation standard to the curator V Touré, J Zobolas, M Kuiper, S Vercruysse Database 2021, baaa107, 2021 | 7 | 2021 |
| DCC terminology service—an automated CI/CD pipeline for converting clinical and biomedical terminologies in graph format for the Swiss personalized health network P Krauss, V Touré, K Gnodtke, K Crameri, S Österle Applied Sciences 11 (23), 11311, 2021 | 6 | 2021 |
| VSM-box: general-purpose interface for biocuration and knowledge representation S Vercruysse, J Zobolas, V Touré, MK Andersen, M Kuiper Preprints, 2020 | 6 | 2020 |
| Evolution of computational models in BioModels Database and the Physiome Model Repository M Scharm, T Gebhardt, V Touré, A Bagnacani, A Salehzadeh-Yazdi, ... BMC Systems Biology 12, 1-10, 2018 | 6 | 2018 |
