| Initial sequence of the chimpanzee genome and comparison with the human genome Chimpanzee Sequencing and Analysis Consortium Waterson Robert H. waterston ... Nature 437 (7055), 69-87, 2005 | 2298 | 2005 |
| Nanopore sequencing and assembly of a human genome with ultra-long reads M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ... Nature biotechnology 36 (4), 338-345, 2018 | 1837 | 2018 |
| The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... Science 376 (6588), 44-53, 2022 | 1743 | 2022 |
| The UCSC genome browser database: 2015 update KR Rosenbloom, J Armstrong, GP Barber, J Casper, H Clawson, ... Nucleic acids research 43 (D1), D670-D681, 2015 | 1078 | 2015 |
| Improved data analysis for the MinION nanopore sequencer M Jain, IT Fiddes, KH Miga, HE Olsen, B Paten, M Akeson Nature methods 12 (4), 351-356, 2015 | 776 | 2015 |
| Telomere-to-telomere assembly of a complete human X chromosome KH Miga, S Koren, A Rhie, MR Vollger, A Gershman, A Bzikadze, ... Nature 585 (7823), 79-84, 2020 | 678 | 2020 |
| HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads S Nurk, BP Walenz, A Rhie, MR Vollger, GA Logsdon, R Grothe, KH Miga, ... Genome research 30 (9), 1291-1305, 2020 | 511 | 2020 |
| Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes K Shafin, T Pesout, R Lorig-Roach, M Haukness, HE Olsen, C Bosworth, ... Nature biotechnology 38 (9), 1044-1053, 2020 | 380 | 2020 |
| A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023 | 296 | 2023 |
| The structure, function and evolution of a complete human chromosome 8 GA Logsdon, MR Vollger, PH Hsieh, Y Mao, MA Liskovykh, S Koren, ... Nature 593 (7857), 101-107, 2021 | 258 | 2021 |
| Complete genomic and epigenetic maps of human centromeres N Altemose, GA Logsdon, AV Bzikadze, P Sidhwani, SA Langley, ... Science 376 (6588), eabl4178, 2022 | 246 | 2022 |
| Linear assembly of a human centromere on the Y chromosome M Jain, HE Olsen, DJ Turner, D Stoddart, KV Bulazel, B Paten, D Haussler, ... Nature biotechnology 36 (4), 321-323, 2018 | 242 | 2018 |
| Centromere reference models for human chromosomes X and Y satellite arrays KH Miga, Y Newton, M Jain, N Altemose, HF Willard, WJ Kent Genome research 24 (4), 697-707, 2014 | 239 | 2014 |
| The Human Pangenome Project: a global resource to map genomic diversity T Wang, L Antonacci-Fulton, K Howe, HA Lawson, JK Lucas, AM Phillippy, ... Nature 604 (7906), 437-446, 2022 | 237 | 2022 |
| A genome-wide survey of structural variation between human and chimpanzee TL Newman, E Tuzun, VA Morrison, KE Hayden, M Ventura, SD McGrath, ... Genome research 15 (10), 1344-1356, 2005 | 233 | 2005 |
| A complete reference genome improves analysis of human genetic variation S Aganezov, SM Yan, DC Soto, M Kirsche, S Zarate, P Avdeyev, ... Science 376 (6588), eabl3533, 2022 | 192 | 2022 |
| From telomere to telomere: The transcriptional and epigenetic state of human repeat elements SJ Hoyt, JM Storer, GA Hartley, PGS Grady, A Gershman, LG de Lima, ... Science 376 (6588), eabk3112, 2022 | 182 | 2022 |
| Epigenetic patterns in a complete human genome A Gershman, MEG Sauria, X Guitart, MR Vollger, PW Hook, SJ Hoyt, ... Science 376 (6588), eabj5089, 2022 | 164 | 2022 |
| Segmental duplications and their variation in a complete human genome MR Vollger, X Guitart, PC Dishuck, L Mercuri, WT Harvey, A Gershman, ... Science 376 (6588), eabj6965, 2022 | 158 | 2022 |
| Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads K Shafin, T Pesout, PC Chang, M Nattestad, A Kolesnikov, S Goel, G Baid, ... Nature methods 18 (11), 1322-1332, 2021 | 145 | 2021 |
Benedict PatenAssociate Professor; Associate Director, UC Santa Cruz Genomics Institute, University of CaliforniaVerified email at ucsc.edu
