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Alexander (Sasha) Wait Zaranek
Alexander (Sasha) Wait Zaranek
Curii Corporation
Verified email at post.harvard.edu - Homepage
Title
Cited by
Cited by
Year
Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays
R Drmanac, AB Sparks, MJ Callow, AL Halpern, NL Burns, BG Kermani, ...
Science 327 (5961), 78-81, 2010
15372010
Toil enables reproducible, open source, big biomedical data analyses
J Vivian, AA Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ...
Nature biotechnology 35 (4), 314-316, 2017
9962017
Clinical assessment incorporating a personal genome
EA Ashley, AJ Butte, MT Wheeler, R Chen, TE Klein, FE Dewey, ...
The Lancet 375 (9725), 1525-1535, 2010
8032010
Extensive sequencing of seven human genomes to characterize benchmark reference materials
JM Zook, D Catoe, J McDaniel, L Vang, N Spies, A Sidow, Z Weng, Y Liu, ...
Scientific data 3 (1), 1-26, 2016
6662016
A highly annotated whole-genome sequence of a Korean individual
JI Kim, YS Ju, H Park, S Kim, S Lee, JH Yi, J Mudge, NA Miller, D Hong, ...
nature 460 (7258), 1011-1015, 2009
3962009
Accurate whole-genome sequencing and haplotyping from 10 to 20 human cells
BA Peters, BG Kermani, AB Sparks, O Alferov, P Hong, A Alexeev, Y Jiang, ...
Nature 487 (7406), 190-195, 2012
3762012
A public resource facilitating clinical use of genomes
MP Ball, JV Thakuria, AW Zaranek, T Clegg, AM Rosenbaum, X Wu, ...
Proceedings of the National Academy of Sciences 109 (30), 11920-11927, 2012
2232012
Phased whole-genome genetic risk in a family quartet using a major allele reference sequence
FE Dewey, R Chen, SP Cordero, KE Ormond, C Caleshu, KJ Karczewski, ...
PLoS genetics 7 (9), e1002280, 2011
1592011
Swift: primary data analysis for the Illumina Solexa sequencing platform
N Whiteford, T Skelly, C Curtis, ME Ritchie, A Löhr, AW Zaranek, ...
Bioinformatics 25 (17), 2194-2199, 2009
1312009
Multiplex padlock targeted sequencing reveals human hypermutable CpG variations
JB Li, Y Gao, J Aach, K Zhang, GV Kryukov, B Xie, A Ahlford, JK Yoon, ...
Genome research 19 (9), 1606-1615, 2009
1222009
Harvard Personal Genome Project: lessons from participatory public research
MP Ball, JR Bobe, MF Chou, T Clegg, PW Estep, JE Lunshof, ...
Genome medicine 6, 1-7, 2014
1192014
Genome graphs
AM Novak, G Hickey, E Garrison, S Blum, A Connelly, A Dilthey, ...
BioRxiv, 101378, 2017
552017
A survey of genomic traces reveals a common sequencing error, RNA editing, and DNA editing
AW Zaranek, EY Levanon, T Zecharia, T Clegg, GM Church
PLoS genetics 6 (5), e1000954, 2010
522010
Accelerating genomic data generation and facilitating genomic data access using decentralization, privacy-preserving technologies and equitable compensation
D Grishin, K Obbad, P Estep, K Quinn, SW Zaranek, AW Zaranek, ...
Blockchain in Healthcare Today, 2018
392018
Rapid and efficient analysis of 20,000 RNA-seq samples with Toil
J Vivian, A Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ...
bioRxiv, 062497, 2016
262016
Principles and recommendations for standardizing the use of the next-generation sequencing variant file in clinical settings
IM Lubin, N Aziz, LJ Babb, D Ballinger, H Bisht, DM Church, S Cordes, ...
The Journal of Molecular Diagnostics 19 (3), 417-426, 2017
232017
The whole genome sequences and experimentally phased haplotypes of over 100 personal genomes
Q Mao, S Ciotlos, RY Zhang, MP Ball, R Chin, P Carnevali, N Barua, ...
Gigascience 5 (1), s13742-016-0148-z, 2016
222016
Back to the future: from genome to metabolome
JV Thakuria, AW Zaranek, GM Church, GT Berry
Human Mutation 33 (5), 809-812, 2012
92012
An unbiased index to quantify participant’s phenotypic contribution to an open-access cohort
Y Chan, M Tung, AS Garruss, SW Zaranek, YK Chan, JE Lunshof, ...
Scientific Reports 7 (1), 46148, 2017
62017
Tiling the genome into consistently named subsequences enables precision medicine and machine learning with millions of complex individual data-sets
S Guthrie, A Connelly, P Amstutz, AF Berrey, N Cesar, J Chen, ...
PeerJ PrePrints, 2015
52015
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