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Aakash Sur
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Integrated functional genomic analysis enables annotation of kidney genome-wide association study loci
KB Sieber, A Batorsky, K Siebenthall, KL Hudkins, JD Vierstra, S Sullivan, ...
Journal of the American Society of Nephrology 30 (3), 421-441, 2019
302019
Sensing Host Arginine Is Essential for Leishmania Parasites’ Intracellular Development
A Goldman-Pinkovich, S Kannan, R Nitzan-Koren, M Puri, H Pawar, ...
MBio 11 (5), 10.1128/mbio. 02023-20, 2020
192020
Dynamic colocalization of 2 simultaneously active VSG expression sites within a single expression-site body in Trypanosoma brucei
J Budzak, LE Kerry, A Aristodemou, BS Hall, K Witmer, M Kushwaha, ...
Proceedings of the National Academy of Sciences 116 (33), 16561-16570, 2019
182019
Chromatin-Associated Protein Complexes Link DNA Base J and Transcription Termination in Leishmania
BC Jensen, IQ Phan, JR McDonald, A Sur, MA Gillespie, JA Ranish, ...
Msphere 6 (1), 10.1128/msphere. 01204-20, 2021
132021
Turnover of variant surface glycoprotein in Trypanosoma brucei is a bimodal process
P Garrison, U Khan, M Cipriano, PJ Bush, J McDonald, A Sur, PJ Myler, ...
Mbio 12 (4), 10.1128/mbio. 01725-21, 2021
112021
Euglena International Network (EIN): Driving euglenoid biotechnology for the benefit of a challenged world
TGE Ebenezer, RS Low, EC O'Neill, I Huang, A DeSimone, SC Farrow, ...
Biology Open 11 (11), bio059561, 2022
82022
Sensing host arginine is essential for Leishmania parasites’ intracellular development. mBio 11: e02023–20
A Goldman-Pinkovich, S Kannan, R Nitzan-Koren, M Puri, H Pawar, ...
62020
RNA-seq analysis reveals differences in transcript abundance between cultured and sand fly-derived Leishmania infantum promastigotes
PJ Alcolea, A Alonso, L Baugh, C Paisie, G Ramasamy, A Sekar, A Sur, ...
Parasitology international 67 (4), 476-480, 2018
52018
Localization of Epigenetic Markers in Leishmania Chromatin
JR McDonald, BC Jensen, A Sur, ILK Wong, SM Beverley, PJ Myler
Pathogens 11 (8), 930, 2022
32022
A benchmark of Hi-C scaffolders using reference genomes and de novo assemblies
A Sur, WS Noble, PJ Myler
BioRXiV, 2022.04. 20.488415, 2022
32022
Quantitative RNA analysis using RNA-Seq
PJ Myler, JA McDonald, PJ Alcolea, A Sur
Leishmania: Methods and Protocols, 95-108, 2019
32019
Immunization with a Trypanosoma cruzi cyclophilin-19 deletion mutant protects against acute Chagas disease in mice
BK Jha, S Varikuti, C Verma, R Shivahare, N Bishop, GP Dos Santos, ...
npj Vaccines 8 (1), 63, 2023
22023
An effective live vaccine strain of Trypanosoma cruzi prevents Chagas disease in the mouse model
B Jha, S Varikuti, N Bishop, G dos Santos, J McDonald, A Sur, P Myler, ...
12020
Edison: measuring scaffolding accuracy with edit distance
A Sur, WS Noble, S Sullivan, P Myler
bioRxiv, 2022.03. 25.484952, 2022
2022
Data Driven Methods for Scaffolding Genomes with Hi-C
A Sur
University of Washington, 2022
2022
Euglena International Network (EIN): Driving euglenoids into the biotechnology world
TGE Ebenezer, RS Low, EC O’Neill, IS Huang, A DeSimone, SC Farrow, ...
OSF Preprints, 2022
2022
Unveiling Elements of Genomic Architecture with Genome Wide Chromatin Conformation Capture.
A Sur, J McDonald, B Jensen, WS Noble, PJ Myler
AMIA, 2018
2018
DNA Aptamers Targeting NF-κB in Environmentally Induced Oxidative Stress
A Sur
Undergraduate Research Journal, 65, 2012
2012
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Articles 1–18