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Minfeng Xiao
Minfeng Xiao
Verified email at genomics.cn
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Year
Prophage Hunter: an integrative hunting tool for active prophages
W Song, HX Sun, C Zhang, L Cheng, Y Peng, Z Deng, D Wang, Y Wang, ...
Nucleic acids research 47 (W1), W74-W80, 2019
1752019
Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples
M Xiao, X Liu, J Ji, M Li, J Li, L Yang, W Sun, P Ren, G Yang, J Zhao, ...
Genome medicine 12, 1-15, 2020
1362020
Data-driven quantitative modeling of bacterial active nematics
H Li, X Shi, M Huang, X Chen, M Xiao, C Liu, H Chaté, HP Zhang
Proceedings of the National Academy of Sciences 116 (3), 777-785, 2019
1242019
Intra-host variation and evolutionary dynamics of SARS-CoV-2 populations in COVID-19 patients
Y Wang, D Wang, L Zhang, W Sun, Z Zhang, W Chen, A Zhu, Y Huang, ...
Genome Medicine 13, 1-13, 2021
1142021
The multidrug efflux pump MdtEF protects against nitrosative damage during the anaerobic respiration in Escherichia coli
Y Zhang, M Xiao, T Horiyama, Y Zhang, X Li, K Nishino, A Yan
Journal of Biological Chemistry 286 (30), 26576-26584, 2011
982011
Environmental and genetic determinants of plasmid mobility in pathogenic Escherichia coli
JH Bethke, A Davidovich, L Cheng, AJ Lopatkin, W Song, JT Thaden, ...
Science advances 6 (4), eaax3173, 2020
592020
Population bottlenecks and intra-host evolution during human-to-human transmission of SARS-CoV-2
D Wang, Y Wang, W Sun, L Zhang, J Ji, Z Zhang, X Cheng, Y Li, F Xiao, ...
Frontiers in medicine 8, 585358, 2021
462021
Transcriptional regulation of the outer membrane porin gene ompW reveals its physiological role during the transition from the aerobic to the anaerobic lifestyle of Escherichia …
M Xiao, Y Lai, J Sun, G Chen, A Yan
Frontiers in microbiology 7, 799, 2016
342016
Coupling metagenomics with cultivation to select host‐specific probiotic micro‐organisms for subtropical aquaculture
J Cui, M Xiao, M Liu, Z Wang, F Liu, L Guo, H Meng, H Zhang, J Yang, ...
Journal of applied microbiology 123 (5), 1274-1285, 2017
272017
MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks
Y Peng, S Tang, D Wang, H Zhong, H Jia, X Cai, Z Zhang, M Xiao, H Yang, ...
GigaScience 7 (11), giy121, 2018
202018
Genomic characterization of four novel bacteriophages infecting the clinical pathogen Klebsiella pneumoniae
B Estrada Bonilla, AR Costa, DF Van Den Berg, T Van Rossum, ...
DNA Research 28 (4), dsab013, 2021
192021
Advances and challenges in cataloging the human gut virome
J Li, F Yang, M Xiao, A Li
Cell Host & Microbe 30 (7), 908-916, 2022
182022
Harnessing stepping-stone hosts to engineer, select, and reboot synthetic bacteriophages in one pot
L Cheng, Z Deng, H Tao, W Song, B Xing, W Liu, L Kong, S Yuan, Y Ma, ...
Cell Reports Methods 2 (5), 2022
132022
Genetic signatures for lineage/sublineage classification of HPV16, 18, 52 and 58 variants
Z Ou, Z Chen, Y Zhao, H Lu, W Liu, W Li, P Ren, C Geng, M Xiao, G Hu, ...
Virology 553, 62-69, 2021
132021
Temporal encoding of bacterial identity and traits in growth dynamics
C Zhang, W Song, HR Ma, X Peng, DJ Anderson, VG Fowler Jr, ...
Proceedings of the National Academy of Sciences 117 (33), 20202-20210, 2020
132020
Vertical and horizontal gene transfer tradeoffs direct plasmid fitness
JH Bethke, HR Ma, R Tsoi, L Cheng, M Xiao, L You
Molecular Systems Biology 19 (2), e11300, 2023
122023
PhaGAA: an integrated web server platform for phage genome annotation and analysis
J Wu, Q Liu, M Li, J Xu, C Wang, J Zhang, M Xiao, Y Bin, J Xia
Bioinformatics 39 (3), btad120, 2023
52023
Characterization of a novel genus of jumbo phages and their application in wastewater treatment
M Hu, B Xing, M Yang, R Han, H Pan, H Guo, Z Liu, T Huang, K Du, ...
Iscience 26 (6), 2023
32023
DPProm: a two-layer predictor for identifying promoters and their types on phage genome using deep learning
C Wang, J Zhang, L Cheng, J Wu, M Xiao, J Xia, Y Bin
IEEE Journal of Biomedical and Health Informatics 26 (10), 5258-5266, 2022
32022
Substantial viral diversity in bats and rodents from East Africa: insights into evolution, recombination, and cocirculation
D Wang, X Yang, Z Ren, B Hu, H Zhao, K Yang, P Shi, Z Zhang, Q Feng, ...
Microbiome 12 (1), 72, 2024
2024
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