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Michael Smoot
Michael Smoot
Illumina, Inc.
Verified email at aescon.com
Title
Cited by
Cited by
Year
Versatile and open software for comparing large genomes
S Kurtz, A Phillippy, AL Delcher, M Smoot, M Shumway, C Antonescu, ...
Genome biology 5, 1-9, 2004
54442004
Cytoscape 2.8: new features for data integration and network visualization
ME Smoot, K Ono, J Ruscheinski, PL Wang, T Ideker
Bioinformatics 27 (3), 431-432, 2011
49762011
Integration of biological networks and gene expression data using Cytoscape
MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ...
Nature protocols 2 (10), 2366-2382, 2007
27172007
A travel guide to Cytoscape plugins
R Saito, ME Smoot, K Ono, J Ruscheinski, PL Wang, S Lotia, AR Pico, ...
Nature methods 9 (11), 1069-1076, 2012
14732012
Fast statistical alignment
RK Bradley, A Roberts, M Smoot, S Juvekar, J Do, C Dewey, I Holmes, ...
PLoS computational biology 5 (5), e1000392, 2009
4022009
A human MAP kinase interactome
S Bandyopadhyay, C Chiang, J Srivastava, M Gersten, S White, R Bell, ...
Nature methods 7 (10), 801-805, 2010
2402010
Cytoscape: the network visualization tool for GenomeSpace workflows
B Demchak, T Hull, M Reich, T Liefeld, M Smoot, T Ideker, JP Mesirov
F1000Research 3, 2014
1792014
NetworkBLAST: comparative analysis of protein networks
M Kalaev, M Smoot, T Ideker, R Sharan
Bioinformatics 24 (4), 594-596, 2008
1442008
Exploring biological networks with Cytoscape software
N Yeung, MS Cline, A Kuchinsky, ME Smoot, GD Bader
Current Protocols in Bioinformatics 23 (1), 8.13. 1-8.13. 20, 2008
782008
PiNGO: a Cytoscape plugin to find candidate genes in biological networks
M Smoot, K Ono, T Ideker, S Maere
Bioinformatics 27 (7), 1030-1031, 2011
502011
Cytoscape 2.8
ME Smoot, K Ono, J Ruscheinski, PL Wang, T Ideker
Bioinformatics 27 (3), 431-432, 2011
292011
Assembling global maps of cellular function through integrative analysis of physical and genetic networks
R Srivas, G Hannum, J Ruscheinski, K Ono, PL Wang, M Smoot, T Ideker
Nature protocols 6 (9), 1308-1323, 2011
252011
Improving pairwise sequence alignment accuracy using near-optimal protein sequence alignments
ML Sierk, ME Smoot, EJ Bass, WR Pearson
BMC bioinformatics 11, 1-15, 2010
242010
Deep semantic protein representation for annotation, discovery, and engineering
AS Schwartz, GJ Hannum, ZR Dwiel, ME Smoot, AR Grant, JM Knight, ...
BioRxiv, 365965, 2018
232018
The protein architecture of human secretory vesicles reveals differential regulation of signaling molecule secretion by protein kinases
SJ Bark, J Wegrzyn, L Taupenot, M Ziegler, DT O'Connor, Q Ma, M Smoot, ...
Public Library of Science 7 (8), e41134, 2012
152012
Visualization of near-optimal sequence alignments
ME Smoot, SA Guerlain, WR Pearson
Bioinformatics 20 (6), 953-958, 2004
132004
A system for visualizing and analyzing near-optimal protein sequence alignments
ME Smoot, EJ Bass, SA Guerlain, WR Pearson
Information Visualization 4 (3), 224-237, 2005
72005
Network visualization and data analysis using Cytoscape
M Smoot, T Ideker
中国化学会计算机化学专业委员会. 第十届全国计算 (机) 化学学术会议论文摘要集, 0
1
Facilitating secure execution of external workflows for genomic sequencing diagnostics
M Smoot, J Ward, A French, R Taylor
US Patent App. 17/935,476, 2023
2023
Dynamic graphical status summaries for nucelotide sequencing
J Ward, R Constandse, M Smoot, M Beoris, A French
US Patent App. 17/936,722, 2023
2023
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