| How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort F Wegner, B Cabrera-Gil, A Tanguy, C Beckmann, N Beerenwinkel, ... Microbiology spectrum, e03628-23, 2024 | | 2024 |
| Mutation order in acute myeloid leukemia identifies uncommon patterns of evolution and illuminates phenotypic heterogeneity M Schwede, K Jahn, J Kuipers, LA Miles, RL Bowman, T Robinson, ... Leukemia, 1-10, 2024 | 1 | 2024 |
| Beyond normal: On the evaluation of mutual information estimators P Czyż, F Grabowski, J Vogt, N Beerenwinkel, A Marx Advances in Neural Information Processing Systems 36, 2024 | 6 | 2024 |
| De novo detection of somatic variants in long-read single-cell RNA sequencing data A Dondi, N Borgsmüller, PF Ferreira, BJ Haas, F Jacob, ... bioRxiv, 2024.03. 06.583775, 2024 | | 2024 |
| CTAT-LR-fusion: accurate fusion transcript identification from long and short read isoform sequencing at bulk or single cell resolution Q Qin, V Popic, H Yu, E White, A Khorgade, A Shin, K Wienand, A Dondi, ... bioRxiv, 2024.02. 24.581862, 2024 | 1 | 2024 |
| Modeling metastatic progression from cross-sectional cancer genomics data K Rupp, A Lösch, YL Hu, C Nie, R Schill, M Klever, S Pfahler, L Grasedyck, ... bioRxiv, 2024.01. 30.577989, 2024 | | 2024 |
| Fair Clustering: A Causal Perspective F Bayer, D Plecko, N Beerenwinkel, J Kuipers arXiv preprint arXiv:2312.09061, 2023 | | 2023 |
| Predicting tumour content of liquid biopsies from cell-free DNA M Cardner, F Marass, E Gedvilaite, JL Yang, DWY Tsui, N Beerenwinkel BMC Bioinformatics 24 (1), 1-9, 2023 | | 2023 |
| Detection of isoforms and genomic alterations by high-throughput full-length single-cell RNA sequencing in ovarian cancer A Dondi, U Lischetti, F Jacob, F Singer, N Borgsmüller, R Coelho, ... Nature Communications 14 (1), 7780, 2023 | 6 | 2023 |
| Estimated transmission dynamics of SARS-CoV-2 variants from wastewater are robust to differential shedding D Dreifuss, JS Huisman, JC Rusch, L Caduff, P Ganesanandamoorthy, ... medRxiv, 2023.10. 25.23297539, 2023 | | 2023 |
| The Mixtures and the Neural Critics: On the Pointwise Mutual Information Profiles of Fine Distributions P Czyż, F Grabowski, JE Vogt, N Beerenwinkel, A Marx arXiv:2310.10240, 2023 | | 2023 |
| Single-cell phylogenies reveal changes in the evolutionary rate within cancer and healthy tissues N Borgsmüller, M Valecha, J Kuipers, N Beerenwinkel, D Posada Cell Genomics 3 (9), 2023 | 1 | 2023 |
| Genomic reproducibility in the bioinformatics era PI Baykal, PP Łabaj, F Markowetz, LM Schriml, DJ Stekhoven, S Mangul, ... arXiv:2308.09558, 2023 | | 2023 |
| COMPASS: joint copy number and mutation phylogeny reconstruction from amplicon single-cell sequencing data E Sollier, J Kuipers, K Takahashi, N Beerenwinkel, K Jahn Nature Communications 14 (1), 4921, 2023 | 5 | 2023 |
| Biallelic ELOC-inactivated renal cell carcinoma: molecular features supporting classification as a distinct entity AA Batavia, D Rutishauser, B Sobottka, P Schraml, N Beerenwinkel, ... Modern Pathology 36 (8), 100194, 2023 | 5 | 2023 |
| Coherent pathway enrichment estimation by modeling inter-pathway dependencies using regularized regression KP Jablonski, N Beerenwinkel Bioinformatics 39 (8), btad522, 2023 | 1 | 2023 |
| Expanding epidemic of recently acquired HCV in HIV-coinfected patients over a period of 10 years C Graf, L Fuhrmann, T Lutz, C Stephan, G Knecht, P Gute, M Bickel, ... JHEP Reports 5 (7), 100701, 2023 | 2 | 2023 |
| Joint inference of exclusivity patterns and recurrent trajectories from tumor mutation trees XG Luo, J Kuipers, N Beerenwinkel Nature communications 14 (1), 3676, 2023 | 9 | 2023 |
| Because I’m happy–positive affect and its predictive value for future disease activity in patients with inflammatory bowel diseases: a retrospective cohort study BM Lang, M Ledergerber, SBU Jordi, N Krupka, L Biedermann, ... Therapeutic Advances in Gastroenterology 16, 2023 | 1 | 2023 |
| Genome-wide DNA methylation profiling of HPV-negative leukoplakia and gingivobuccal complex cancers M Inchanalkar, S Srivatsa, S Ambatipudi, PG Bhosale, A Patil, AA Schäffer, ... Clinical Epigenetics 15 (1), 93, 2023 | 2 | 2023 |
Jack KuipersETH ZurichVerified email at bsse.ethz.ch
