| STRING v10: protein–protein interaction networks, integrated over the tree of life D Szklarczyk, A Franceschini, S Wyder, K Forslund, D Heller, ... Nucleic acids research 43 (D1), D447-D452, 2015 | 2692 | 2015 |
| STRING v9. 1: protein-protein interaction networks, with increased coverage and integration A Franceschini, D Szklarczyk, S Frankild, M Kuhn, M Simonovic, A Roth, ... Nucleic acids research 41 (D1), D808-D815, 2012 | 2585 | 2012 |
| The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored D Szklarczyk, A Franceschini, M Kuhn, M Simonovic, A Roth, P Minguez, ... Nucleic acids research 39 (suppl 1), D561-D568, 2011 | 2528 | 2011 |
| STRING 8—a global view on proteins and their functional interactions in 630 organisms LJ Jensen, M Kuhn, M Stark, S Chaffron, C Creevey, J Muller, T Doerks, ... Nucleic acids research 37 (suppl_1), D412-D416, 2008 | 1925 | 2008 |
| Drug target identification using side-effect similarity M Campillos, M Kuhn, AC Gavin, LJ Jensen, P Bork Science 321 (5886), 263-266, 2008 | 920 | 2008 |
| STRING 7—recent developments in the integration and prediction of protein interactions C Von Mering, LJ Jensen, M Kuhn, S Chaffron, T Doerks, B Krüger, B Snel, ... Nucleic acids research 35 (suppl_1), D358-D362, 2006 | 668 | 2006 |
| A side effect resource to capture phenotypic effects of drugs M Kuhn, M Campillos, I Letunic, LJ Jensen, P Bork Molecular systems biology 6 (1), 343, 2010 | 625 | 2010 |
| The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible D Szklarczyk, JH Morris, H Cook, M Kuhn, S Wyder, M Simonovic, ... Nucleic acids research 45 (D1), D362-D368, 2017 | 477 | 2017 |
| eggNOG v3. 0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges S Powell, D Szklarczyk, K Trachana, A Roth, M Kuhn, J Muller, R Arnold, ... Nucleic Acids Research 40 (D1), D284-D289, 2012 | 364 | 2012 |
| STITCH: interaction networks of chemicals and proteins M Kuhn, C von Mering, M Campillos, LJ Jensen, P Bork Nucleic acids research 36 (suppl_1), D684-D688, 2007 | 362 | 2007 |
| SuperTarget and Matador: resources for exploring drug-target relationships S Günther, M Kuhn, M Dunkel, M Campillos, C Senger, E Petsalaki, ... Nucleic acids research 36 (suppl_1), D919-D922, 2007 | 334 | 2007 |
| eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences J Huerta-Cepas, D Szklarczyk, K Forslund, H Cook, D Heller, MC Walter, ... Nucleic acids research 44 (D1), D286-D293, 2015 | 310 | 2015 |
| eggNOG v4. 0: nested orthology inference across 3686 organisms S Powell, K Forslund, D Szklarczyk, K Trachana, A Roth, J Huerta-Cepas, ... Nucleic acids research 42 (D1), D231-D239, 2014 | 267 | 2014 |
| STITCH 4: integration of protein–chemical interactions with user data M Kuhn, D Szklarczyk, S Pletscher-Frankild, TH Blicher, C von Mering, ... Nucleic acids research 42 (D1), D401-D407, 2014 | 244 | 2014 |
| eggNOG: automated construction and annotation of orthologous groups of genes LJ Jensen, P Julien, M Kuhn, C von Mering, J Muller, T Doerks, P Bork Nucleic acids research 36 (suppl_1), D250-D254, 2007 | 232 | 2007 |
| eggNOG v2. 0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations J Muller, D Szklarczyk, P Julien, I Letunic, A Roth, M Kuhn, S Powell, ... Nucleic acids research 38 (suppl_1), D190-D195, 2009 | 219 | 2009 |
| STITCH 3: zooming in on protein–chemical interactions M Kuhn, D Szklarczyk, A Franceschini, C von Mering, LJ Jensen, P Bork Nucleic Acids Research, 2011 | 217 | 2011 |
| STITCH 2: an interaction network database for small molecules and proteins M Kuhn, D Szklarczyk, A Franceschini, M Campillos, C von Mering, ... Nucleic acids research 38 (suppl_1), D552-D556, 2009 | 191 | 2009 |
| The SIDER database of drugs and side effects M Kuhn, I Letunic, LJ Jensen, P Bork Nucleic acids research 44 (D1), D1075-D1079, 2016 | 175 | 2016 |
| Generation and evaluation of dimension-reduced amino acid parameter representations by artificial neural networks J Meiler, M Müller, A Zeidler, F Schmäschke Journal of Molecular Modeling 7 (9), 360-369, 2001 | 150 | 2001 |
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