| The repertoire of mutational signatures in human cancer LB Alexandrov, J Kim, NJ Haradhvala, MN Huang, AW Tian Ng, Y Wu, ... Nature 578 (7793), 94-101, 2020 | 2510 | 2020 |
| Pan-cancer analysis of whole genomes I The, TPCA of Whole, Genomes Consortium Nature 578 (7793), 82, 2020 | 1501 | 2020 |
| Signatures of copy number alterations in human cancer CD Steele, A Abbasi, SMA Islam, AL Bowes, A Khandekar, K Haase, ... Nature 606 (7916), 984-991, 2022 | 187 | 2022 |
| Uncovering novel mutational signatures by de novo extraction with SigProfilerExtractor SMA Islam, M Díaz-Gay, Y Wu, M Barnes, R Vangara, EN Bergstrom, ... Cell genomics 2 (11), 2022 | 144 | 2022 |
| St. Jude Cloud: a pediatric cancer genomic data-sharing ecosystem C McLeod, AM Gout, X Zhou, A Thrasher, D Rahbarinia, SW Brady, ... Cancer discovery 11 (5), 1082-1099, 2021 | 121 | 2021 |
| Genomic and evolutionary classification of lung cancer in never smokers T Zhang, P Joubert, N Ansari-Pour, W Zhao, PH Hoang, R Lokanga, ... Nature genetics 53 (9), 1348-1359, 2021 | 98 | 2021 |
| Mutational signatures in esophageal squamous cell carcinoma from eight countries with varying incidence S Moody, S Senkin, SMA Islam, J Wang, D Nasrollahzadeh, ... Nature Genetics 53 (11), 1553-1563, 2021 | 81 | 2021 |
| Fiber reinforced layered dielectric nanocomposite MM Rahman, AB Puthirath, A Adumbumkulath, T Tsafack, H Robatjazi, ... Advanced Functional Materials 29 (28), 1900056, 2019 | 67 | 2019 |
| Group PMSW, Getz G, Rozen SG, Stratton MR, Consortium P. The repertoire of mutational signatures in human cancer LB Alexandrov, J Kim, NJ Haradhvala, MN Huang, AW Tian Ng, Y Wu, ... Nature 578 (7793), 94-101, 2020 | 44 | 2020 |
| Protein classification using modified n-grams and skip-grams SMA Islam, BJ Heil, CM Kearney, EJ Baker Bioinformatics 34 (9), 1481-1487, 2018 | 37 | 2018 |
| PredSTP: a highly accurate SVM based model to predict sequential cystine stabilized peptides SMA Islam, T Sajed, CM Kearney, EJ Baker BMC bioinformatics 16, 1-11, 2015 | 24 | 2015 |
| Making plants into cost-effective bioreactors for highly active antimicrobial peptides M Ghidey, SMA Islam, G Pruett, CM Kearney New biotechnology 56, 63-70, 2020 | 18 | 2020 |
| Comprehensive analysis of mutational signatures reveals distinct patterns and molecular processes across 27 pediatric cancers V Thatikonda, SMA Islam, RJ Autry, BC Jones, SN Gröbner, G Warsow, ... Nature cancer 4 (2), 276-289, 2023 | 16 | 2023 |
| Repurposing a drug targeting peptide for targeting antimicrobial peptides against Staphylococcus A Choudhury, SMA Islam, MR Ghidey, CM Kearney Biotechnology Letters 42, 287-294, 2020 | 16 | 2020 |
| Bioinformatic Methods to Identify Mutational Signatures in Cancer SMA Islam, LB Alexandrov Leukemia Stem Cells, 447-473, 2020 | 9 | 2020 |
| Assigning biological function using hidden signatures in cystine-stabilized peptide sequences SMA Islam, CM Kearney, EJ Baker Scientific reports 8 (1), 9049, 2018 | 9 | 2018 |
| Assigning mutational signatures to individual samples and individual somatic mutations with SigProfilerAssignment M Díaz-Gay, R Vangara, M Barnes, X Wang, SMA Islam, I Vermes, S Duke, ... Bioinformatics 39 (12), btad756, 2023 | 7 | 2023 |
| Identification of stress related molecular biomarkers in zebrafish employing an in-silico approach to access toxicity based risks in aquaculture MM Khan, SM Ashiqul Islam, A Mustafa Poultry, Fisheries & Wildlife Sciences 3 (2), 2015 | 7 | 2015 |
| Classes, databases, and prediction methods of pharmaceutically and commercially important cystine-stabilized peptides SMA Islam, CM Kearney, E Baker Toxins 10 (6), 251, 2018 | 6 | 2018 |
| CSPred: A machine-learning-based compound model to identify the functional activities of biologically-stable toxins SMA Islam, CM Kearney, EJ Baker IEEE Bioinformatics and Biomedicine 2017, 2017 | 6 | 2017 |
Ludmil B. AlexandrovAssociate Professor, University of California San DiegoVerified email at ucsd.edu
