| Web 3DNA 2.0 for the analysis, visualization, and modeling of 3D nucleic acid structures S Li, WK Olson, XJ Lu Nucleic acids research 47 (W1), W26-W34, 2019 | 216 | 2019 |
| Features of genomic organization in a nucleotide-resolution molecular model of the Escherichia coli chromosome WC Hacker*, S Li*, AH Elcock Nucleic acids research 45 (13), 7541-7554, 2017 | 62 | 2017 |
| Binding of regulatory proteins to nucleosomes is modulated by dynamic histone tails Y Peng, S Li, A Onufriev, D Landsman, AR Panchenko Nature communications 12 (1), 5280, 2021 | 52 | 2021 |
| Reparametrization of protein force field nonbonded interactions guided by osmotic coefficient measurements from molecular dynamics simulations MS Miller, WK Lay, S Li, WC Hacker, J An, J Ren, AH Elcock Journal of chemical theory and computation 13 (4), 1812-1826, 2017 | 42 | 2017 |
| DNA methylation: Precise modulation of chromatin structure and dynamics S Li*, Y Peng*, AR Panchenko Current Opinion in Structural Biology 75, 102430, 2022 | 36 | 2022 |
| Residue-Specific Force Field (RSFF2) improves the modeling of conformational behavior of peptides and proteins S Li, AH Elcock The journal of physical chemistry letters 6 (11), 2127-2133, 2015 | 33 | 2015 |
| Histone tails as signaling antennas of chromatin Y Peng*, S Li*, D Landsman, AR Panchenko Current Opinion in Structural Biology 67, 153-160, 2021 | 30 | 2021 |
| DNA methylation cues in nucleosome geometry, stability and unwrapping S Li, Y Peng, D Landsman, AR Panchenko Nucleic Acids Research 50 (4), 1864-1874, 2022 | 25 | 2022 |
| Detection and quantitation of soluble B7-H3 in expressed prostatic secretions: a novel marker in patients with chronic prostatitis X Wei, G Zhang, H Yuan, X Ding, S Li, X Zhang, J Hou The Journal of urology 185 (2), 532-537, 2011 | 25 | 2011 |
| Effects of Noncanonical Base Pairing on RNA Folding: Structural Context and Spatial Arrangements of G∙ A Pairs WK Olson, S Li, T Kaukonen, A Colasanti, Y Xin, XJ Lu Biochemistry 58 (20), 2474-2487, 2019 | 21 | 2019 |
| Parametrization of backbone flexibility in a coarse-grained force field for proteins (coffdrop) derived from all-atom explicit-solvent molecular dynamics simulations of all … T Frembgen-Kesner, CT Andrews, S Li, NA Ngo, SA Shubert, A Jain, ... Journal of chemical theory and computation 11 (5), 2341-2354, 2015 | 20 | 2015 |
| Molecular dynamics simulations of 441 two-residue peptides in aqueous solution: Conformational preferences and neighboring residue effects with the Amber ff99SB-ildn-NMR force … S Li, CT Andrews, T Frembgen-Kesner, MS Miller, SL Siemonsma, ... Journal of chemical theory and computation 11 (3), 1315-1329, 2015 | 15 | 2015 |
| Histone variant H2A. Z modulates nucleosome dynamics to promote DNA accessibility S Li, T Wei, A Panchenko Nature Communications 14 (1), 769, 2023 | 14 | 2023 |
| Homology modeling and screening of new 14α-demethylase inhibitor (DMI) fungicides based on optimized expression of CYP51 from Ustilago maydis in Escherichia coli R Han, J Zhang, S Li, S Cao, H Geng, Y Yuan, W Xiao, S Liu, D Liu Journal of agricultural and food chemistry 58 (24), 12810-12816, 2010 | 11 | 2010 |
| Optimised expression and spectral analysis of the target enzyme CYP51 from Penicillium digitatum with possible new DMI fungicides J Zhang, L Zhao, J Zhang, R Han, S Li, Y Yuan, J Wan, W Xiao, D Liu Pest management science 66 (12), 1344-1350, 2010 | 8 | 2010 |
| NaV1. 2 EFL domain allosterically enhances Ca2+ binding to sites I and II of WT and pathogenic calmodulin mutants bound to the channel CTD R Mahling, L Hovey, HM Isbell, DC Marx, MS Miller, AM Kilpatrick, ... Structure 29 (12), 1339-1356. e7, 2021 | 6 | 2021 |
| Homology modeling, molecular docking and spectra assay studies of sterol 14α-demethylase from Penicillium digitatum S Li, J Zhang, S Cao, R Han, Y Yuan, J Yang, Y Yan, D Liu Biotechnology letters 33, 2005-2011, 2011 | 6 | 2011 |
| Analysis of Rare Codon and mRNA Structure About Ustilago maydis CYP 51 and Molecular Docking With Fungicide Tebuconazole S Li, R Han, LL Yuan, L Xiong, YZ Yuan, JK Yang, YJ Yan, DL Liu Progress in Biochemistry and Biophysics 38 (8), 751-758, 2011 | 5 | 2011 |
| Computational simulation of adapter length-dependent lasso probe capture efficiency J Liu, S Shukor, S Li, A Tamayo, L Tosi, B Larman, V Nanda, WK Olson, ... Biomolecules 9 (5), 199, 2019 | 3 | 2019 |
| Overexpression, homology modeling and coenzyme docking studies of the cytochrome P450nor2 from Cylindrocarpon tonkinense N Li, YZ Zhang, DD Li, YH Niu, J Liu, S Li, YZ Yuan, SL Chen, H Geng, ... Molecular Biology 50 (2), 320-327, 2016 | 2 | 2016 |
Adrian H. ElcockDepartment of Biochemistry,. University of IowaVerified email at uiowa.edu
