| A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing R Zhang, CPG Calixto, Y Marquez, P Venhuizen, NA Tzioutziou, W Guo, ... Nucleic acids research 45 (9), 5061-5073, 2017 | 237 | 2017 |
| Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome CPG Calixto, W Guo, AB James, NA Tzioutziou, JC Entizne, PE Panter, ... The Plant Cell 30 (7), 1424-1444, 2018 | 235 | 2018 |
| Barley SIX-ROWED SPIKE3 encodes a putative Jumonji C-type H3K9me2/me3 demethylase that represses lateral spikelet fertility H Bull, MC Casao, M Zwirek, AJ Flavell, WTB Thomas, W Guo, R Zhang, ... Nature Communications 8 (1), 936, 2017 | 92 | 2017 |
| 3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists W Guo, NA Tzioutziou, G Stephen, I Milne, CPG Calixto, R Waugh, ... RNA biology 18 (11), 1574-1587, 2021 | 86 | 2021 |
| Cold-dependent expression and alternative splicing of Arabidopsis long non-coding RNAs CPG Calixto, NA Tzioutziou, AB James, C Hornyik, W Guo, R Zhang, ... Frontiers in Plant Science 10, 404796, 2019 | 57 | 2019 |
| BaRTv1. 0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq P Rapazote-Flores, M Bayer, L Milne, CD Mayer, J Fuller, W Guo, ... BMC genomics 20, 1-17, 2019 | 52 | 2019 |
| Nonsense-mediated RNA decay factor UPF1 is critical for posttranscriptional and translational gene regulation in Arabidopsis VK Raxwal, CG Simpson, J Gloggnitzer, JC Entinze, W Guo, R Zhang, ... Plant Cell 32 (9), 2725-2741, 2020 | 44 | 2020 |
| AtRTD – a comprehensive reference transcript dataset resource for accurate quantification of transcript‐specific expression in Arabidopsis thaliana R Zhang, CPG Calixto, NA Tzioutziou, AB James, CG Simpson, W Guo, ... New Phytologist 208 (1), 96-101, 2015 | 44 | 2015 |
| The effect of drought on transcriptome and hormonal profiles in barley genotypes with contrasting drought tolerance A Harb, C Simpson, W Guo, G Govindan, VG Kakani, R Sunkar Frontiers in plant science 11, 618491, 2020 | 39 | 2020 |
| A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis R Zhang, R Kuo, M Coulter, CPG Calixto, JC Entizne, W Guo, Y Marquez, ... Genome biology 23 (1), 149, 2022 | 36 | 2022 |
| Downy Mildew effector HaRxL21 interacts with the transcriptional repressor TOPLESS to promote pathogen susceptibility S Harvey, P Kumari, D Lapin, T Griebel, R Hickman, W Guo, R Zhang, ... PLoS pathogens 16 (8), e1008835, 2020 | 33 | 2020 |
| TSIS: an R package to infer alternative splicing isoform switches for time-series data W Guo, CPG Calixto, JWS Brown, R Zhang Bioinformatics 33 (20), 3308-3310, 2017 | 30 | 2017 |
| How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY) AB James, CPG Calixto, NA Tzioutziou, W Guo, R Zhang, CG Simpson, ... Plant, cell & environment 41 (7), 1539-1550, 2018 | 25 | 2018 |
| BaRTv2: a highly resolved barley reference transcriptome for accurate transcript‐specific RNA‐seq quantification M Coulter, JC Entizne, W Guo, M Bayer, R Wonneberger, L Milne, ... The Plant Journal 111 (4), 1183-1202, 2022 | 22 | 2022 |
| Evaluation and improvement of the regulatory inference for large co-expression networks with limited sample size W Guo, CPG Calixto, N Tzioutziou, P Lin, R Waugh, JWS Brown, R Zhang BMC systems biology 11, 1-12, 2017 | 22 | 2017 |
| Differential nucleosome occupancy modulates alternative splicing in Arabidopsis thaliana I Jabre, S Chaudhary, W Guo, M Kalyna, ASN Reddy, W Chen, R Zhang, ... New Phytologist 229 (4), 1937-1945, 2021 | 21 | 2021 |
| Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors P Ding, T Sakai, R Krishna Shrestha, N Manosalva Perez, W Guo, ... Journal of Experimental Botany 72 (22), 7927-7941, 2021 | 20 | 2021 |
| Transcriptional profiling reveals a critical role of GmFT2a in soybean staygreen syndrome caused by the pest Riptortus pedestris Z Wei, W Guo, S Jiang, D Yan, Y Shi, B Wu, X Xin, L Chen, Y Cai, ... New Phytologist 237 (5), 1876-1890, 2023 | 18 | 2023 |
| AtRTD2: A Reference Transcript Dataset for accurate quantification of alternative splicing and expression changes in Arabidopsis thaliana RNA-seq data R Zhang, CPG Calixto, Y Marquez, P Venhuizen, NA Tzioutziou, W Guo, ... BioRxiv, 051938, 2016 | 13 | 2016 |
| TranSuite: a software suite for accurate translation and characterization of transcripts JC Entizne, W Guo, CPG Calixto, M Spensley, N Tzioutziou, R Zhang, ... BioRxiv, 2020.12. 15.422989, 2020 | 8 | 2020 |
