| The Norway spruce genome sequence and conifer genome evolution B Nystedt, NR Street, A Wetterbom, A Zuccolo, YC Lin, DG Scofield, ... Nature 497 (7451), 579-584, 2013 | 1542 | 2013 |
| Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... Gigascience 2 (1), 2047-217X-2-10, 2013 | 792 | 2013 |
| A global metagenomic map of urban microbiomes and antimicrobial resistance D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ... Cell 184 (13), 3376-3393. e17, 2021 | 205 | 2021 |
| Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 189 | 2022 |
| GAM-NGS: genomic assemblies merger for next generation sequencing R Vicedomini, F Vezzi, S Scalabrin, L Arvestad, A Policriti BMC bioinformatics 14, 1-18, 2013 | 87 | 2013 |
| Strainberry: automated strain separation in low-complexity metagenomes using long reads R Vicedomini, C Quince, AE Darling, R Chikhi Nature Communications 12 (1), 4485, 2021 | 42 | 2021 |
| A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling A Ugarte, R Vicedomini, J Bernardes, A Carbone Microbiome 6, 1-27, 2018 | 39 | 2018 |
| Multiple profile models extract features from protein sequence data and resolve functional diversity of very different protein families R Vicedomini, JP Bouly, E Laine, A Falciatore, A Carbone Molecular Biology and Evolution 39 (4), msac070, 2022 | 11 | 2022 |
| decOM: similarity-based microbial source tracking of ancient oral samples using k-mer-based methods C Duitama González, R Vicedomini, T Lemane, N Rascovan, H Richard, ... Microbiome 11 (1), 243, 2023 | 2 | 2023 |
| Targeted domain assembly for fast functional profiling of metagenomic datasets with S3A L David, R Vicedomini, H Richard, A Carbone Bioinformatics 36 (13), 3975-3981, 2020 | 2 | 2020 |
| Dietary adaptation in Neandertal, Denisovan and Sapiens revealed by gene copy number variation R Vicedomini, L Polit, S Condemi, L Longo, A Carbone bioRxiv, 2021.10. 30.466563, 2021 | 1 | 2021 |
| MyCLADE: a multi-source domain annotation server for sequence functional exploration R Vicedomini, C Blachon, F Oteri, A Carbone Nucleic Acids Research 49 (W1), W452-W458, 2021 | 1 | 2021 |
| Unlocking the Soil Microbiome: Unraveling Soil Microbial Complexity Using Long-Read Metagenomics C Belliardo, N Maurice, C Frioux, C Lemaitre, R Vicedomini, S Mondy, ... EAGS 2024-The International Environmental and Agronomical Genomics symposium, 2024 | | 2024 |
| Exploring and quantifying the soil genetic diversity captured by long and short-read shotgun metagenomic sequencing C Belliardo, S Mondy, A Pere, C Lemaitre, R Vicedomini, C Frioux, ... Journées 2024 du programme Agroécologie et Numérique, 2024 | | 2024 |
| Metagenomic assembly of complex ecosystems with highly accurate long-reads N Maurice, C Lemaitre, C Frioux, R Vicedomini Journées 2024 du PEPR Agroécologie et Numérique, 2024 | | 2024 |
| aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets CD González, S Rangavittal, R Vicedomini, R Chikhi, H Richard Iscience 26 (11), 2023 | | 2023 |
| Alignment and reconciliation strategies for large-scale de novo assembly R Vicedomini Università degli Studi di Udine, 2016 | | 2016 |
| Hierarchical Assembly of Pools R Vicedomini, F Vezzi, S Scalabrin, L Arvestad, A Policriti Bioinformatics and Biomedical Engineering: Third International Conference …, 2015 | | 2015 |
| Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species B Keith R, F Joseph N, A Anton, B Paul, B Michael, B Inanç, B Sébastien, ... | | 2013 |
| Evaluation of existing highly accurate long-read metagenome assemblers C Belliardo, N Maurice, C Frioux, C Lemaitre, R Vicedomini, S Mondy, ... | | |
Alberto PolicritiUniversity of UdineVerified email at uniud.it
