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| The regulated retrotransposon transcriptome of mammalian cells GJ Faulkner, Y Kimura, CO Daub, S Wani, C Plessy, KM Irvine, ... Nature genetics 41 (5), 563-571, 2009 | 891 | 2009 |
| 5′ end–centered expression profiling using cap-analysis gene expression and next-generation sequencing H Takahashi, T Lassmann, M Murata, P Carninci Nature protocols 7 (3), 542-561, 2012 | 282 | 2012 |
| Genome-wide analysis of promoter architecture in Drosophila melanogaster RA Hoskins, JM Landolin, JB Brown, JE Sandler, H Takahashi, ... Genome research 21 (2), 182-192, 2011 | 280 | 2011 |
| Chromatin signatures and retrotransposon profiling in mouse embryos reveal regulation of LINE-1 by RNA A Fadloun, S Le Gras, B Jost, C Ziegler-Birling, H Takahashi, E Gorab, ... Nature structural & molecular biology 20 (3), 332-338, 2013 | 248 | 2013 |
| Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan C Plessy, N Bertin, H Takahashi, R Simone, M Salimullah, T Lassmann, ... Nature methods 7 (7), 528-534, 2010 | 177 | 2010 |
| Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis C Nepal, Y Hadzhiev, C Previti, V Haberle, N Li, H Takahashi, ... Genome research 23 (11), 1938-1950, 2013 | 131 | 2013 |
| CAGE (cap analysis of gene expression): a protocol for the detection of promoter and transcriptional networks H Takahashi, S Kato, M Murata, P Carninci Gene Regulatory Networks: Methods and Protocols, 181-200, 2012 | 115 | 2012 |
| SINEUPs are modular antisense long non-coding RNAs that increase synthesis of target proteins in cells S Zucchelli, F Fasolo, R Russo, L Cimatti, L Patrucco, H Takahashi, ... Frontiers in cellular neuroscience 9, 174, 2015 | 105 | 2015 |
| SINEUPs: A new class of natural and synthetic antisense long non-coding RNAs that activate translation S Zucchelli, D Cotella, H Takahashi, C Carrieri, L Cimatti, F Fasolo, ... RNA biology 12 (8), 771-779, 2015 | 94 | 2015 |
| Engineering mammalian cell factories with SINEUP noncoding RNAs to improve translation of secreted proteins L Patrucco, A Chiesa, MF Soluri, F Fasolo, H Takahashi, P Carninci, ... Gene 569 (2), 287-293, 2015 | 48 | 2015 |
| 3′-Azido-2′,3′-dideoxynucleoside 5′-triphosphates inhibit telomerase activity in vitro , and the corresponding nucleosides cause telomere … X Liu, H Takahashi, Y Harada, T Ogawara, Y Ogimura, Y Mizushina, ... Nucleic acids research 35 (21), 7140-7149, 2007 | 43 | 2007 |
| SINEUP long non-coding RNA acts via PTBP1 and HNRNPK to promote translational initiation assemblies N Toki, H Takahashi, H Sharma, MNZ Valentine, FUM Rahman, ... Nucleic acids research 48 (20), 11626-11644, 2020 | 42 | 2020 |
| Regional differences in gene expression and promoter usage in aged human brains LM Pardo, P Rizzu, M Francescatto, M Vitezic, GGR Leday, JS Sanchez, ... Neurobiology of aging 34 (7), 1825-1836, 2013 | 42 | 2013 |
| Widespread genome transcription: new possibilities for RNA therapies H Takahashi, P Carninci Biochemical and biophysical research communications 452 (2), 294-301, 2014 | 40 | 2014 |
| Characterization of piRNAs across postnatal development in mouse brain Y Ghosheh, L Seridi, T Ryu, H Takahashi, V Orlando, P Carninci, T Ravasi Scientific reports 6 (1), 25039, 2016 | 38 | 2016 |
| Remodeling of retrotransposon elements during epigenetic induction of adult visual cortical plasticity by HDAC inhibitors A Lennartsson, E Arner, M Fagiolini, A Saxena, R Andersson, ... Epigenetics & Chromatin 8, 1-15, 2015 | 38 | 2015 |
| The status of the human gene catalogue P Amaral, S Carbonell-Sala, FM De La Vega, T Faial, A Frankish, ... Nature 622 (7981), 41-47, 2023 | 33 | 2023 |
| Systematic assessment of long-read RNA-seq methods for transcript identification and quantification FJ Pardo-Palacios, D Wang, F Reese, M Diekhans, S Carbonell-Sala, ... bioRxiv, 2021 | 31 | 2021 |
| Identification of functional features of synthetic SINEUPs, antisense lncRNAs that specifically enhance protein translation H Takahashi, A Kozhuharova, H Sharma, M Hirose, T Ohyama, F Fasolo, ... PloS one 13 (2), e0183229, 2018 | 25 | 2018 |
