| A high-resolution enhancer atlas of the developing telencephalon A Visel, L Taher, H Girgis, D May, O Golonzhka, RV Hoch, GL McKinsey, ... Cell 152 (4), 895-908, 2013 | 268 | 2013 |
| Benchmarking of alignment-free sequence comparison methods A Zielezinski, HZ Girgis, G Bernard, CA Leimeister, K Tang, T Dencker, ... bioRxiv, 611137, 2019 | 185 | 2019 |
| Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale HZ Girgis BMC bioinformatics 16 (1), 227, 2015 | 170 | 2015 |
| MeShClust: an intelligent tool for clustering DNA sequences BT James, BB Luczak, HZ Girgis Nucleic Acids Research, gky315, 2018 | 89 | 2018 |
| System and method for automated disease assessment in capsule endoscopy R Kumar, T Dassopoulos, H Girgis, G Hager US Patent App. 13/382,855, 2012 | 80 | 2012 |
| A survey and evaluations of histogram-based statistics in alignment-free sequence comparison BB Luck, BT James, HZ Girgis Briefings in Bioinformatics, https://doi.org/10.1093/bib/bbx161, 2017 | 57 | 2017 |
| An intelligent system to detect Crohn's disease inflammation in Wireless Capsule Endoscopy videos HZ Girgis, BR Mitchell, T Dassopoulos, G Mullin, G Hager Biomedical Imaging: From Nano to Macro, 2010 IEEE International Symposium on …, 2010 | 30 | 2010 |
| JavaDD: a declarative debugger for java HZ Girgis, B Jayaraman Department of Computer Science and Engineering, University at Buffalo …, 2006 | 25 | 2006 |
| MsDetector: toward a standard computational tool for DNA microsatellites detection HZ Girgis, SL Sheetlin Nucleic acids research 41 (1), e22-e22, 2012 | 24 | 2012 |
| Predicting tissue specific cis-regulatory modules in the human genome using pairs of co-occurring motifs HZ Girgis, I Ovcharenko BMC bioinformatics 13 (1), 25, 2012 | 24 | 2012 |
| LtrDetector: A tool-suite for detecting long terminal repeat retrotransposons de-novo JD Valencia, HZ Girgis BMC genomics 20 (1), 450, 2019 | 22 | 2019 |
| A meta registration framework for lesion matching S Seshamani, P Rajan, R Kumar, H Girgis, T Dassopoulos, G Mullin, ... International Conference on Medical Image Computing and Computer-Assisted …, 2009 | 14 | 2009 |
| MeShClust v3. 0: High-quality clustering of DNA sequences using the mean shift algorithm and alignment-free identity scores HZ Girgis BMC genomics 23 (1), 1-16, 2022 | 13 | 2022 |
| Identity: rapid alignment-free prediction of sequence alignment identity scores using self-supervised general linear models HZ Girgis, BT James, BB Luczak NAR Genomics and Bioinformatics 3 (1), lqab001, 2021 | 11 | 2021 |
| Look4TRs: A de-novo tool for detecting simple tandem repeats using self-supervised hidden Markov models. A Velasco, BT James, VD Wells, HZ Girgis bioRxiv, 449801, 2018 | 10 | 2018 |
| Stp: the sample-train-predict algorithm and its application to protein structure meta-selection HZ Girgis, JJ Corso The State University of New York at Buffalo, Technical Report 16, 2008, 2008 | 9 | 2008 |
| On-line hierarchy of general linear models for selecting and ranking the best predicted protein structures HZ Girgis, JJ Corso, D Fischer Engineering in Medicine and Biology Society, 2009. EMBC 2009. Annual …, 2009 | 8 | 2009 |
| Visualizing errors in object oriented programs HZ Girgis, B Jayaraman, PV Gestwicki Companion to the 20th annual ACM SIGPLAN conference on Object-oriented …, 2005 | 8 | 2005 |
| Machine-learning-based meta approaches to protein structure prediction HZ Girgis State University of New York at Buffalo, 2008 | 7 | 2008 |
| MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences B James, HZ Girgis bioRxiv, 451278, 2018 | 6 | 2018 |
Benjamin T. JamesGraduate student, MITVerified email at mit.edu
