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Benjamin A. Himes
Benjamin A. Himes
research scientist, Stochastic Analytics, LLC
Verified email at clearnoise.org - Homepage
Title
Cited by
Cited by
Year
emClarity: software for high-resolution cryo-electron tomography and subtomogram averaging
BA Himes, P Zhang
Nature methods 15 (11), 955-961, 2018
2122018
Cyclophilin A stabilizes the HIV-1 capsid through a novel non-canonical binding site
C Liu, JR Perilla, J Ning, M Lu, G Hou, R Ramalho, BA Himes, G Zhao, ...
Nature communications 7 (1), 10714, 2016
1692016
CryoEM and computer simulations reveal a novel kinase conformational switch in bacterial chemotaxis signaling
CK Cassidy, BA Himes, FJ Alvarez, J Ma, G Zhao, JR Perilla, K Schulten, ...
Elife 4, e08419, 2015
1192015
Locating macromolecular assemblies in cells by 2D template matching with cisTEM
BA Lucas, BA Himes, L Xue, T Grant, J Mahamid, N Grigorieff
Elife 10, e68946, 2021
522021
In vitro protease cleavage and computer simulations reveal the HIV-1 capsid maturation pathway
J Ning, G Erdemci-Tandogan, EL Yufenyuy, J Wagner, BA Himes, G Zhao, ...
Nature communications 7 (1), 13689, 2016
522016
High-resolution in situ structure determination by cryo-electron tomography and subtomogram averaging using emClarity
T Ni, T Frosio, L Mendonça, Y Sheng, D Clare, BA Himes, P Zhang
Nature protocols 17 (2), 421-444, 2022
512022
Structure and dynamics of the E. coli chemotaxis core signaling complex by cryo-electron tomography and molecular simulations
CK Cassidy, BA Himes, D Sun, J Ma, G Zhao, JS Parkinson, PJ Stansfeld, ...
Communications biology 3 (1), 24, 2020
482020
Controlled bacterial lysis for electron tomography of native cell membranes
X Fu, BA Himes, D Ke, WJ Rice, J Ning, P Zhang
Structure 22 (12), 1875-1882, 2014
362014
CryoET structures of immature HIV Gag reveal six-helix bundle
L Mendonça, D Sun, J Ning, J Liu, A Kotecha, M Olek, T Frosio, X Fu, ...
Communications biology 4 (1), 481, 2021
312021
CryoEM-based hybrid modeling approaches for structure determination
CK Cassidy, BA Himes, Z Luthey-Schulten, P Zhang
Current opinion in microbiology 43, 14-23, 2018
212018
Cryo-TEM simulations of amorphous radiation-sensitive samples using multislice wave propagation
B Himes, N Grigorieff
IUCrJ 8 (6), 943-953, 2021
202021
Application of super-resolution and correlative double sampling in cryo-electron microscopy
Y Sheng, PJ Harrison, V Vogirala, Z Yang, C Strain-Damerell, T Frosio, ...
Faraday Discussions 240, 261-276, 2022
32022
Baited reconstruction with 2D template matching for high-resolution structure determination in vitro and in vivo without template bias
BA Lucas, BA Himes, N Grigorieff
Elife 12, RP90486, 2023
22023
Mapping atomic models back into cells-visual proteomics and in situ structure determination.
B Himes
ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES 77, A216-A216, 2021
2021
Locating Macromolecular Assemblies in Cells by 2D Template Matching with cisTEM [preprint]
B Lucas, BA Himes, L Xue, T Grant, J Mahamid, N Grigorieff
2021
Cryo-TEM simulations of amorphous radiation-sensitive samples using multislice wave propagation [preprint]
BA Himes, N Grigorieff
2021
CryoET structures of immature HIV Gag reveal a complete six-helix bundle and stabilizing small molecules distinct from IP6
L Mendonça, D Sun, J Ning, J Liu, A Kotecha, M Olek, T Frosio, X Fu, ...
bioRxiv, 2020.10. 31.363382, 2020
2020
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