| Second assessment of climate change for the Baltic Sea basin II BACC, A Team SpringerOpen, 2015 | 266 | 2015 |
| Knowledge of the Baltic Sea physics gained during the BALTEX and related programmes A Omstedt, J Elken, A Lehmann, J Piechura Progress in Oceanography 63 (1-2), 1-28, 2004 | 129 | 2004 |
| Progress in physical oceanography of the Baltic Sea during the 2003–2014 period A Omstedt, J Elken, A Lehmann, M Leppäranta, HEM Meier, K Myrberg, ... Progress in Oceanography 128, 139-171, 2014 | 116 | 2014 |
| Simulated halocline variability in the Baltic Sea and its impact on hypoxia during 1961–2007 G Väli, HEM Meier, J Elken Journal of Geophysical Research: Oceans 118 (12), 6982-7000, 2013 | 86 | 2013 |
| Baltic Sea oceanography J Elken, W Matthäus Regional Climate Studies, Assessment of climate change for the Baltic Sea …, 2008 | 77* | 2008 |
| On the estuarine transport reversal in deep layers of the Gulf of Finland J Elken, U Raudsepp, U Lips Journal of Sea Research 49 (4), 267-274, 2003 | 75 | 2003 |
| The North Atlantic Current and its associated eddy field southeast of Flemish Cap W Krauss, E Fahrbach, A Aitsam, J Elken, P Koske Deep Sea Research Part A. Oceanographic Research Papers 34 (7), 1163-1185, 1987 | 67 | 1987 |
| Deep water overflow, circulation and vertical exchange in the Baltic Proper J Elken Estonian Marine Institute Report Series 6, 1996 | 54* | 1996 |
| Plankton distributions and processes across a front in the open Baltic Sea M Kahru, J Elken, I Kotta, M Simm, K Vilbaste Mar. Ecol. Prog. Ser 20, 101-111, 1984 | 47 | 1984 |
| A view of the Canary Basin thermocline circulation in winter V Fiekas, J Elken, TJ Müller, A Aitsam, W Zenk Journal of Geophysical Research 97 (C8), 12495-12,510, 1992 | 45 | 1992 |
| Estuarine circulation reversals and related rapid changes in winter near-bottom oxygen conditions in the Gulf of Finland, Baltic Sea T Liblik, J Laanemets, U Raudsepp, J Elken, I Suhhova Ocean Science 9 (5), 917-930, 2013 | 42 | 2013 |
| Synoptic scale variability of hydrophysical fields in the Baltic Proper on the basis of CTD measurements A Aitsam, J Elken Elsevier Oceanography Series 34, 433-467, 1982 | 38* | 1982 |
| Fast ferries as a new key forcing factor in Tallinn Bay P Soomere, T., Elken, J., Kask, J., Keevallik, S., Kõuts, T., Metsaveer, J ... Proceedings of the Estonian Academy of Sciences, Engineering 9 (3), 220-242, 2003 | 35* | 2003 |
| Large halocline variations in the Northern Baltic Proper and associated meso-and basin-scale processes J Elken, P Malkki, P Alenius, T Stipa Oceanologia 48 (S), 2006 | 34 | 2006 |
| Structure of unsteady overflow in the Słupsk Furrow of the Baltic Sea V Zhurbas, J Elken, V Paka, J Piechura, G Väli, I Chubarenko, N Golenko, ... Journal of Geophysical Research: Oceans 117 (C4), 2012 | 33 | 2012 |
| Simulation of mesoscale structures and nutrient transport during summer upwelling events in the Gulf of Finland in 2006 J Laanemets, G Väli, V Zhurbas, J Elken, I Lips, U Lips Boreal environment research 16, 15, 2011 | 33 | 2011 |
| Increased frequency of wintertime stratification collapse events in the Gulf of Finland since the 1990s J Elken, U Raudsepp, J Laanemets, J Passenko, I Maljutenko, O Pärn, ... Journal of Marine Systems 129 (1), 47-55, 2014 | 30 | 2014 |
| Recent change—marine circulation and stratification J Elken, A Lehmann, K Myrberg Second assessment of climate change for the Baltic Sea Basin, 131-144, 2015 | 29 | 2015 |
| Circulation patterns in the Gulf of Finland derived from the EOF analysis of model results J Elken, M Nõmm, P Lagemaa Boreal Environ. Res 16, 84-102, 2011 | 28 | 2011 |
| Dependence of upwelling-mediated nutrient transport on wind forcing, bottom topography and stratification in the Gulf of Finland: model experiments J Laanemets, V Zhurbas, J Elken, E Vahtera Boreal environment research 14 (1), 213, 2009 | 28 | 2009 |
