BioContainers Community

Cited by

	All	Since 2019
Citations	1718	1455
h-index	11	11
i10-index	11	11

340

170

255

20152016201720182019202020212022202320248 15 69 143 226 261 338 299 244 85

Co-authors

Björn GrüningUniversity of FreiburgVerified email at informatik.uni-freiburg.de
Yasset Perez-RiverolTeam Coordinator, Proteomics Resources, EMBL-EBI, UKVerified email at ebi.ac.uk
Pablo Moreno CortezTechnical Coordinator, European Bioinformatics InstituteVerified email at ebi.ac.uk
Felipe da Veiga LeprevostPrincipal Scientist, GenentechVerified email at gene.com
Timo SachsenbergStaff Scientist, University of TübingenVerified email at uni-tuebingen.de
Hannes RöstAssistant Professor, University of TorontoVerified email at utoronto.ca
Johannes KösterUniversity of Duisburg-EssenVerified email at uni-due.de
Renan ValierisAC Camargo Cancer CenterVerified email at accamargo.org.br
Christopher Tomkins-TinchBroad Institute of MIT and HarvardVerified email at g.harvard.edu
Julian UszkoreitMedical Bioinformatics, Ruhr University BochumVerified email at rub.de
Hervé MénagerInstitut PasteurVerified email at pasteur.fr
Laurent Gattode Duve Institute, UCLouvainVerified email at uclouvain.be
Andreas SjödinFOIVerified email at foi.se
Dave BouvierComputational Scientist, Pennsylvania State UniversityVerified email at bx.psu.edu
Rafael C. JimenezELIXIRVerified email at ebi.ac.uk
Roberto Vera Alvarez, PhDNational Center for Biotechnology InformationVerified email at ncbi.nlm.nih.gov
Daniel BlankenbergGenomic Medicine Institute - Lerner Research Institute - Cleveland Clinic / Galaxy ProjectVerified email at ccf.org
Michael R. CrusoeCommon Workflow Language project, and othersVerified email at commonwl.org
Dan SøndergaardBioinformatics, BiRC, Aarhus UniversityVerified email at birc.au.dk
Marius van den BeekSci-ScaleVerified email at sci-scale.net

BioContainers Community

Deployment and Community for Bioinformatics Software Development

Verified email at ebi.ac.uk - Homepage

Software Development Containers Deployment Bioinformatics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018	805	2018
BioContainers: an open-source and community-driven framework for software standardization F da Veiga Leprevost, BA Grüning, S Alves Aflitos, HL Röst, J Uszkoreit, ... Bioinformatics 33 (16), 2580-2582, 2017	243	2017
Ten simple rules for taking advantage of Git and GitHub Y Perez-Riverol, L Gatto, R Wang, T Sachsenberg, J Uszkoreit, ... PLoS computational biology 12 (7), e1004947, 2016	151	2016
Four simple recommendations to encourage best practices in research software RC Jiménez, M Kuzak, M Alhamdoosh, M Barker, B Batut, M Borg, ... F1000Research 6, 2017	134	2017
Practical computational reproducibility in the life sciences B Grüning, J Chilton, J Köster, R Dale, N Soranzo, M van den Beek, ... Cell systems 6 (6), 631-635, 2018	133	2018
On best practices in the development of bioinformatics software FV Leprevost, VC Barbosa, EL Francisco, Y Perez-Riverol, PC Carvalho Frontiers in genetics 5, 97575, 2014	74	2014
BioShaDock: a community driven bioinformatics shared Docker-based tools registry F Moreews, O Sallou, H Ménager, C Monjeaud, C Blanchet, O Collin F1000Research 4, 2015	46	2015
Recommendations for the packaging and containerizing of bioinformatics software B Gruening, O Sallou, P Moreno, F da Veiga Leprevost, H Ménager, ... F1000Research 7, 2018	44	2018
Protein inference using PIA workflows and PSI standard file formats J Uszkoreit, Y Perez-Riverol, B Eggers, K Marcus, M Eisenacher Journal of proteome research 18 (2), 741-747, 2018	32	2018
Scalable data analysis in proteomics and metabolomics using BioContainers and workflows engines Y Perez‐Riverol, P Moreno Proteomics 20 (9), 1900147, 2020	30	2020
Galaxy-Kubernetes integration: scaling bioinformatics workflows in the cloud P Moreno, L Pireddu, P Roger, N Goonasekera, E Afgan, ... BioRxiv, 488643, 2018	18	2018
BioContainers Registry: searching for bioinformatics tools, packages and containers J Bai, C Bandla, J Guo, RV Alvarez, JA Vizcaíno, M Bai, P Moreno, ... bioRxiv, 2020.07. 21.187609, 2020	4	2020
A curated Domain centric shared Docker registry linked to the Galaxy toolshed F Moreews, O Sallou, Y Le Bras, G Marie, C Monjeaud, TA Darde, ... Galaxy Community Conference 2015, 2015	4	2015
Cross-platform Software Development and Distribution with Bioconda and BioContainers Y Perez-Riverol, O Sallou, BA Grüning		2020
The backbone of research reproducibility-sustainable and flexible tool deployment B Grüning, J Chilton, J Köster, D Ryan, Y Perez-Riverol F1000Research 6, 2017		2017
An application suite based on the IFB Container as a Service platform F Moreews, O Sallou, O Collin ECCB 2016 (Elixir Talks), 2016		2016
Containerizing Conda J Fonner, R Dooley

The system can't perform the operation now. Try again later.

Articles 1–17

Citations per year

Duplicate citations

Merged citations

Add co-authorsCo-authors

Follow

Cited by

Co-authors