| Community-led, integrated, reproducible multi-omics with anvi’o AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ... Nature microbiology 6 (1), 3-6, 2021 | 425* | 2021 |
| Expanded Phylogenetic Diversity and Metabolic Flexibility of Mercury-Methylating Microorganisms EA McDaniel, BD Peterson, SLR Stevens, PQ Tran, K Anantharaman, ... mSystems 5 (4), 2020 | 61* | 2020 |
| Mercury methylation genes identified across diverse anaerobic microbial guilds in a eutrophic sulfate-enriched lake BD Peterson, EA McDaniel, AG Schmidt, RF Lepak, SE Janssen, PQ Tran, ... Environmental Science & Technology 54 (24), 15840-15851, 2020 | 59* | 2020 |
| Prospects for multi-omics in the microbial ecology of water engineering EA McDaniel, SA Wahl, S Ishii, A Pinto, R Ziels, PH Nielsen, KD McMahon, ... Water Research 205, 117608, 2021 | 28 | 2021 |
| Reevaluation of the Phylogenetic Diversity and Global Distribution of the Genus “Candidatus Accumulibacter” F Petriglieri, CM Singleton, Z Kondrotaite, MKD Dueholm, EA McDaniel, ... Msystems 7 (3), e00016-22, 2022 | 26* | 2022 |
| metabolisHMM: Phylogenomic analysis for exploration of microbial phylogenies and metabolic pathways EA McDaniel, K Anantharaman, KD McMahon bioRxiv, 2019 | 15 | 2019 |
| Metabolic differentiation of co-occurring Accumulibacter clades revealed through genome-resolved metatranscriptomics EA McDaniel, F Moya-Flores, N Keene Beach, PY Camejo, BO Oyserman, ... Msystems 6 (4), 10.1128/msystems. 00474-21, 2021 | 14 | 2021 |
| Genome-resolved metagenomics of a photosynthetic bioreactor performing biological nutrient removal EA McDaniel, R Wever, BO Oyserman, DR Noguera, KD McMahon Microbiology Resource Announcements 10 (18), 10.1128/mra. 00244-21, 2021 | 8 | 2021 |
| Independent mechanisms for acquired salt tolerance versus growth resumption induced by mild ethanol pretreatment in Saccharomyces cerevisiae EA McDaniel, TN Stuecker, M Veluvolu, AP Gasch, JA Lewis mSphere 3 (6), 2018 | 8 | 2018 |
| Creating reproducible workflows for complex computational pipelines FM Celebi, EA McDaniel, T Reiter Arcadia Science, 2023 | 6 | 2023 |
| TbasCO: trait-based comparative ‘omics identifies ecosystem-level and niche-differentiating adaptations of an engineered microbiome EA McDaniel, JJM van Steenbrugge, DR Noguera, KD McMahon, ... ISME Communications 2 (1), 111, 2022 | 6 | 2022 |
| Environmental predictors of electroactive bacterioplankton in small boreal lakes CN Olmsted, R Ort, PQ Tran, EA McDaniel, EE Roden, DR Bond, S He, ... Environmental microbiology 25 (3), 705-720, 2023 | 3 | 2023 |
| Diverse electron carriers drive syntrophic interactions in an enriched anaerobic acetate-oxidizing consortium EA McDaniel, M Scarborough, DG Mulat, X Lin, PS Sampara, HM Olson, ... The ISME Journal 17 (12), 2326-2339, 2023 | 1 | 2023 |
| Discovering shared protein structure signatures connected to polyphosphate accumulation in diverse bacteria P Avasthi, FM Celebi, EA McDaniel Arcadia Science, 2023 | 1 | 2023 |
| Physiological and genomic evidence of cysteine degradation and aerobic hydrogen sulfide production in freshwater bacteria PQ Tran, SC Bachand, JC Hotvedt, K Kieft, EA McDaniel, KD McMahon, ... Msystems 8 (3), e00201-23, 2023 | 1 | 2023 |
| Quickly preprocessing and profiling microbial community sequencing data with a Nextflow workflow for metagenomics RJ Dutton, EA McDaniel Arcadia Science, 2023 | 1 | 2023 |
| How can we identify the common molecular signatures underlying polyphosphate accumulation? FM Celebi, ML Hochstrasser, EA McDaniel, J Neal Arcadia Science, 2023 | | 2023 |
| Repeat expansions associated with human disease are present in diverse organisms P Avasthi, FM Celebi, EA McDaniel, KE Poskanzer, ME Reitman, ... Arcadia Science, 2023 | | 2023 |
| Isolation of a phage with an arabinosylated genome from a cheese microbial community AL Borges, RJ Dutton, EA McDaniel, A Radkov, T Reiter, ECP Weiss Arcadia Science, 2023 | | 2023 |
| Streamlining genome assembly and QC with the reads2genome workflow FM Celebi, EA McDaniel Arcadia Science, 2023 | | 2023 |
Katherine (Trina) McMahonProfessor of Bacteriology, and Civil and Environmental Engineering, University of Wisconsin MadisonVerified email at engr.wisc.edu
