Shibu Yooseph, Ph.D.
TitleCited byYear
The sequence of the human genome
JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, GG Sutton, HO Smith, ...
science 291 (5507), 1304-1351, 2001
166532001
Structure, function and diversity of the healthy human microbiome
C Huttenhower, D Gevers, R Knight, S Abubucker, JH Badger, ...
nature 486 (7402), 207, 2012
48242012
The Sorcerer II global ocean sampling expedition: northwest Atlantic through eastern tropical Pacific
DB Rusch, AL Halpern, G Sutton, KB Heidelberg, S Williamson, ...
PLoS biology 5 (3), e77, 2007
19562007
A framework for human microbiome research
BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ...
nature 486 (7402), 215, 2012
12852012
Exploring expression data: identification and analysis of coexpressed genes
LJ Heyer, S Kruglyak, S Yooseph
Genome research 9 (11), 1106-1115, 1999
12371999
Essential genes of a minimal bacterium
JI Glass, N Assad-Garcia, N Alperovich, S Yooseph, MR Lewis, M Maruf, ...
Proceedings of the National Academy of Sciences 103 (2), 425-430, 2006
8932006
The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families
S Yooseph, G Sutton, DB Rusch, AL Halpern, SJ Williamson, ...
PLoS biology 5 (3), e16, 2007
8672007
A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome
RJ Mural, MD Adams, EW Myers, HO Smith, GLG Miklos, R Wides, ...
Science 296 (5573), 1661-1671, 2002
4112002
Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage
CL Dupont, DB Rusch, S Yooseph, MJ Lombardo, RA Richter, R Valas, ...
The ISME journal 6 (6), 1186, 2012
3452012
The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples
SJ Williamson, DB Rusch, S Yooseph, AL Halpern, KB Heidelberg, ...
PloS one 3 (1), e1456, 2008
3372008
Diet and feeding pattern affect the diurnal dynamics of the gut microbiome
A Zarrinpar, A Chaix, S Yooseph, S Panda
Cell metabolism 20 (6), 1006-1017, 2014
2532014
Whole-genome shotgun assembly and comparison of human genome assemblies
S Istrail, GG Sutton, L Florea, AL Halpern, CM Mobarry, R Lippert, ...
Proceedings of the National Academy of Sciences 101 (7), 1916-1921, 2004
2352004
Genomic and functional adaptation in surface ocean planktonic prokaryotes
S Yooseph, KH Nealson, DB Rusch, JP McCrow, CL Dupont, M Kim, ...
Nature 468 (7320), 60, 2010
2262010
Evaluation of 16S rDNA-based community profiling for human microbiome research
Jumpstart Consortium Human Microbiome Project Data Generation Working Group
PloS one 7 (6), e39315, 2012
2142012
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725, 2017
2132017
Analyses of the microbial diversity across the human microbiome
K Li, M Bihan, S Yooseph, BA Methe
PloS one 7 (6), e32118, 2012
2032012
Haplotyping as perfect phylogeny: A direct approach
V Bafna, D Gusfield, G Lancia, S Yooseph
Journal of Computational Biology 10 (3-4), 323-340, 2003
1772003
Gut microbiome-based metagenomic signature for non-invasive detection of advanced fibrosis in human nonalcoholic fatty liver disease
R Loomba, V Seguritan, W Li, T Long, N Klitgord, A Bhatt, PS Dulai, ...
Cell metabolism 25 (5), 1054-1062. e5, 2017
1662017
Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle
X He, JS McLean, A Edlund, S Yooseph, AP Hall, SY Liu, PC Dorrestein, ...
Proceedings of the National Academy of Sciences 112 (1), 244-249, 2015
1562015
Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum
JS McLean, MJ Lombardo, JH Badger, A Edlund, M Novotny, ...
Proceedings of the National Academy of Sciences 110 (26), E2390-E2399, 2013
1372013
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Articles 1–20