Next generation sequencing and de novo transcriptome analysis of Costus pictus D. Don, a non-model plant with potent anti-diabetic properties RS Annadurai, V Jayakumar, RC Mugasimangalam, MA Katta, S Anand, ... BMC genomics 13, 1-15, 2012 | 94 | 2012 |
Combining evidence from four immune cell types identifies DNA methylation patterns that implicate functionally distinct pathways during Multiple Sclerosis progression E Ewing, L Kular, SJ Fernandes, N Karathanasis, V Lagani, S Ruhrmann, ... EBioMedicine 43, 411-423, 2019 | 57 | 2019 |
Impact of genetic risk loci for multiple sclerosis on expression of proximal genes in patients T James, M Lindén, H Morikawa, SJ Fernandes, S Ruhrmann, M Huss, ... Human molecular genetics 27 (5), 912-928, 2018 | 48 | 2018 |
Hypermethylation of MIR21 in CD4+ T cells from patients with relapsing-remitting multiple sclerosis associates with lower miRNA-21 levels and concomitant up … S Ruhrmann, E Ewing, E Piket, L Kular, JC Cetrulo Lorenzi, SJ Fernandes, ... Multiple Sclerosis Journal 24 (10), 1288-1300, 2018 | 45 | 2018 |
Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3 A Schmidt, F Marabita, NA Kiani, CC Gross, HJ Johansson, S Éliás, ... BMC biology 16, 1-35, 2018 | 28 | 2018 |
Multiplexed next-generation sequencing and de novo assembly to obtain near full-length HIV-1 genome from plasma virus SG Aralaguppe, AB Siddik, A Manickam, AT Ambikan, MM Kumar, ... Journal of virological methods 236, 98-104, 2016 | 25 | 2016 |
Non-parametric combination analysis of multiple data types enables detection of novel regulatory mechanisms in T cells of multiple sclerosis patients SJ Fernandes, H Morikawa, E Ewing, S Ruhrmann, RN Joshi, V Lagani, ... Scientific reports 9 (1), 11996, 2019 | 16 | 2019 |
Phosphatase inhibitor PPP1R11 modulates resistance of human T cells toward Treg-mediated suppression of cytokine expression RN Joshi, SJ Fernandes, MM Shang, NA Kiani, D Gomez-Cabrero, ... Journal of Leukocyte Biology 106 (2), 413-430, 2019 | 14 | 2019 |
Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation I Ferreirós-Vidal, T Carroll, T Zhang, V Lagani, RN Ramirez, ... PLoS Biology 17 (4), e2006506, 2019 | 8 | 2019 |
Deep characterization of paired chromatin and transcriptomes in four immune cell types from multiple sclerosis patients SJ Fernandes, M Ericsson, M Khademi, M Jagodic, T Olsson, ... Epigenomics 13 (20), 1607-1618, 2021 | 4 | 2021 |
An integrated reagent and multimodal analysis workflow to enrich and characterize peptide-specific CD8+ T cells BA Adams, P Shahi, D Reyes, S Maheshwari, N Mousavi, S Krishnan, ... The Journal of Immunology 210 (1_Supplement), 249.17-249.17, 2023 | | 2023 |
High-Throughput Antibody Discovery Using Barcode Enabled Antigen Mapping (BEAM P Shahi, B Adams, D Reyes, S Maheshwari, N Mousavi, S Krishnan, ... The Journal of Immunology 210 (1_Supplement), 249.28-249.28, 2023 | | 2023 |
Extensive evidence for aberrant B cell hypomethylation in relapsing-remitting multiple sclerosis E Ewing, F Al Nimer, SJ Fernandes, L Kular, P Stridh, P Noori, J Tegner, ... | | 2022 |
Exploring the Genomic and Transcriptomic Landscape of Immune Cells in Multiple Sclerosis: Towards Better Biomarkers, Diagnosis and Treatment. SJ Fernandes PQDT-Global, 2020 | | 2020 |
Paired ATAC Seq and RNA Seq in blood derived CD4, CD8, CD14 and CD19 cells of MS patients and healthy controls SJ Fernandes, M Ericsson, M Khademi, T Olsson, D Gomez-Cabrero, ... MULTIPLE SCLEROSIS JOURNAL 25, 436-437, 2019 | | 2019 |
Additional file 7: of Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3 A Schmidt, F Marabita, NA Kiani, CC Gross, HJ Johansson, S Éliás, ... figshare, 2018 | | 2018 |
Understanding progression in multiple sclerosis through transcriptomics and DNA methylation in CD4+ and CD8+ T cells S Fernandes, H Morikawa, E Ewing, S Ruhrmann, N Karanthanasis, ... SAGE PUBLICATIONS LTD, 2017 | | 2017 |
Shared DNA methylation profiles in four immune cell types from Multiple Sclerosis patients E Ewing, S Ruhrmann, L Kular, Y Liu, S Fernandes, H Morikawa, J Tegner, ... SCANDINAVIAN JOURNAL OF IMMUNOLOGY 86 (4), 282-282, 2017 | | 2017 |