The induction of macrophage gene expression by LPS predominantly utilizes Myd88-independent signaling cascades H Björkbacka, KA Fitzgerald, F Huet, X Li, JA Gregory, MA Lee, CM Ordija, ... Physiological Genomics 19 (3), 319-330, 2004 | 364 | 2004 |
Transcriptional regulation of mammalian miRNA genes BC Schanen, X Li Genomics 97 (1), 1-6, 2011 | 224 | 2011 |
TarPmiR: a new approach for microRNA target site prediction J Ding, X Li, H Hu Bioinformatics 32 (18), 2768-2775, 2016 | 166 | 2016 |
Transcription factors STAT6 and KLF4 implement macrophage polarization via the dual catalytic powers of MCPIP N Kapoor, J Niu, Y Saad, S Kumar, T Sirakova, E Becerra, X Li, ... The Journal of Immunology 194 (12), 6011-6023, 2015 | 164 | 2015 |
Evolution of the redox function in mammalian apurinic/apyrimidinic endonuclease MM Georgiadis, M Luo, RK Gaur, S Delaplane, X Li, MR Kelley Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 643 (1 …, 2008 | 142 | 2008 |
Transcriptional profiling of Vibrio cholerae recovered directly from patient specimens during early and late stages of human infection RC LaRocque, JB Harris, M Dziejman, X Li, AI Khan, ASG Faruque, ... Infection and immunity 73 (8), 4488-4493, 2005 | 138 | 2005 |
Estimating the repeat structure and length of DNA sequences using ℓ-tuples X Li, MS Waterman Genome research 13 (8), 1916-1922, 2003 | 121 | 2003 |
H3K4me2 reliably defines transcription factor binding regions in different cells Y Wang, X Li, H Hu Genomics 103 (2-3), 222-228, 2014 | 106 | 2014 |
Interpretation of deep learning in genomics and epigenomics A Talukder, C Barham, X Li, H Hu Briefings in Bioinformatics 22 (3), bbaa177, 2021 | 79 | 2021 |
Sampling motifs on phylogenetic trees X Li, WH Wong Proceedings of the National Academy of Sciences 102 (27), 9481-9486, 2005 | 68 | 2005 |
Transcriptional regulation in eukaryotic ribosomal protein genes H Hu, X Li Genomics 90 (4), 421-423, 2007 | 65 | 2007 |
Reliable prediction of transcription factor binding sites by phylogenetic verification X Li, S Zhong, WH Wong Proceedings of the National Academy of Sciences 102 (47), 16945-16950, 2005 | 65 | 2005 |
Transcriptional regulation of co-expressed microRNA target genes Y Wang, X Li, H Hu Genomics 98 (6), 445-452, 2011 | 60 | 2011 |
SETDB2 Links Glucocorticoid to Lipid Metabolism through Insig2a Regulation M Roqueta-Rivera, RM Esquejo, PE Phelan, K Sandor, B Daniel, ... Cell Metabolism 24 (3), 474-484, 2016 | 58 | 2016 |
PETModule: a motif module based approach for enhancer target gene prediction C Zhao, X Li, H Hu Scientific reports 6, 30043, 2016 | 37 | 2016 |
MOPAT: a graph-based method to predict recurrent cis-regulatory modules from known motifs J Hu, H Hu, X Li Nucleic acids research 36 (13), 4488-4497, 2008 | 37 | 2008 |
Dysregulated immune profiles for skin and dendritic cells are associated with increased host susceptibility to Haemophilus ducreyi infection in human volunteers TL Humphreys, L Li, X Li, DM Janowicz, KR Fortney, Q Zhao, W Li, ... Infection and immunity 75 (12), 5686-5697, 2007 | 37 | 2007 |
MBBC: an efficient approach for metagenomic binning based on clustering Y Wang, H Hu, X Li BMC bioinformatics 16 (1), 36, 2015 | 36 | 2015 |
MicroRNA modules prefer to bind weak and unconventional target sites J Ding, X Li, H Hu Bioinformatics 31 (9), 1366-1374, 2015 | 34 | 2015 |
Thousands of cis-regulatory sequence combinations are shared by Arabidopsis and poplar J Ding, H Hu, X Li Plant physiology 158 (1), 145-155, 2012 | 34 | 2012 |