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Robert Raddi
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Reconciling simulations and experiments with BICePs: a review
VA Voelz, Y Ge, RM Raddi
Frontiers in Molecular Biosciences 8, 661520, 2021
82021
A Markov State Model of Solvent Features Reveals Water Dynamics in Protein-Peptide Binding
R Raddi, V Voelz
12023
Expanded ensemble predictions of absolute binding free energies in the SAMPL9 host–guest challenge
MFD Hurley, RM Raddi, JG Pattis, VA Voelz
Physical Chemistry Chemical Physics 25 (47), 32393-32406, 2023
12023
Stacking Gaussian processes to improve predictions in the SAMPL7 challenge
RM Raddi, VA Voelz
Journal of Computer-Aided Molecular Design 35 (9), 953-961, 2021
12021
Automated optimization of force field parameters against ensemble-averaged measurements with Bayesian Inference of Conformational Populations
RM Raddi, VA Voelz
arXiv preprint arXiv:2402.11169, 2024
2024
Expanded ensemble predictions of water-toluene partition coefficients for small drug-like molecules
SR Goold, RM Raddi, VA Voelz
Biophysical Journal 123 (3), 426a, 2024
2024
Model selection using replica averaging with Bayesian inference of conformational populations
RM Raddi, T Marshall, Y Ge, V Voelz
2023
BICePs v2. 0: Software for Ensemble Reweighting Using Bayesian Inference of Conformational Populations
RM Raddi, Y Ge, VA Voelz
Journal of chemical information and modeling 63 (8), 2370-2381, 2023
2023
An evaluation of force field accuracy for the mini-protein chignolin using Markov state models
T Marshall, R Raddi, V Voelz
Biophysical Journal 122 (3), 420a, 2023
2023
Evaluation and design of conformationally stable halogen-substituted beta-hairpins using molecular simulation
TD Nguyen, R Raddi, M Erdelyi, V Voelz
Biophysical Journal 121 (3), 48a, 2022
2022
Markov State Model Approach to Estimating Rates and Mechanisms of VSL12 Peptide to SRC-Family Kinase SH3 Domains
R Raddi, V Voelz
Biophysical Journal 118 (3), 205a, 2020
2020
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Articles 1–11