Reconciling simulations and experiments with BICePs: a review VA Voelz, Y Ge, RM Raddi Frontiers in Molecular Biosciences 8, 661520, 2021 | 8 | 2021 |
A Markov State Model of Solvent Features Reveals Water Dynamics in Protein-Peptide Binding R Raddi, V Voelz | 1 | 2023 |
Expanded ensemble predictions of absolute binding free energies in the SAMPL9 host–guest challenge MFD Hurley, RM Raddi, JG Pattis, VA Voelz Physical Chemistry Chemical Physics 25 (47), 32393-32406, 2023 | 1 | 2023 |
Stacking Gaussian processes to improve predictions in the SAMPL7 challenge RM Raddi, VA Voelz Journal of Computer-Aided Molecular Design 35 (9), 953-961, 2021 | 1 | 2021 |
Automated optimization of force field parameters against ensemble-averaged measurements with Bayesian Inference of Conformational Populations RM Raddi, VA Voelz arXiv preprint arXiv:2402.11169, 2024 | | 2024 |
Expanded ensemble predictions of water-toluene partition coefficients for small drug-like molecules SR Goold, RM Raddi, VA Voelz Biophysical Journal 123 (3), 426a, 2024 | | 2024 |
Model selection using replica averaging with Bayesian inference of conformational populations RM Raddi, T Marshall, Y Ge, V Voelz | | 2023 |
BICePs v2. 0: Software for Ensemble Reweighting Using Bayesian Inference of Conformational Populations RM Raddi, Y Ge, VA Voelz Journal of chemical information and modeling 63 (8), 2370-2381, 2023 | | 2023 |
An evaluation of force field accuracy for the mini-protein chignolin using Markov state models T Marshall, R Raddi, V Voelz Biophysical Journal 122 (3), 420a, 2023 | | 2023 |
Evaluation and design of conformationally stable halogen-substituted beta-hairpins using molecular simulation TD Nguyen, R Raddi, M Erdelyi, V Voelz Biophysical Journal 121 (3), 48a, 2022 | | 2022 |
Markov State Model Approach to Estimating Rates and Mechanisms of VSL12 Peptide to SRC-Family Kinase SH3 Domains R Raddi, V Voelz Biophysical Journal 118 (3), 205a, 2020 | | 2020 |