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Ge Liu
Ge Liu
PhD in CSAIL, MIT; Assistant Professor @ CS, UIUC; Postdoc at IPD, UW
Verified email at mit.edu
Title
Cited by
Cited by
Year
Convolutional neural network architectures for predicting DNA–protein binding
H Zeng, MD Edwards, G Liu, DK Gifford
Bioinformatics 32 (12), i121-i127, 2016
5212016
Antibody Complementarity Determining Region Design Using High-Capacity Machine Learning
G Liu, H Zeng, J Mueller, B Carter, Z Wang, J Schilz, G Horny, ...
Bioinformatics, 682880, 2019
1422019
Computationally optimized SARS-CoV-2 MHC class I and II vaccine formulations predicted to target human haplotype distributions
G Liu, B Carter, T Bricken, S Jain, M Viard, M Carrington, DK Gifford
Cell systems 11 (2), 131-144. e6, 2020
632020
Maximizing Overall Diversity for Improved Uncertainty Estimates in Deep Ensembles
G Liu, S Jain, J Mueller, D Gifford
Proceedings of the 34th AAAI Conference on Artificial Intelligence, 2020, 2019
542019
Predicted cellular immunity population coverage gaps for SARS-CoV-2 subunit vaccines and their augmentation by compact peptide sets
G Liu, B Carter, DK Gifford
Cell systems 12 (1), 102-107. e4, 2021
462021
Visualizing complex feature interactions and feature sharing in genomic deep neural networks
G Liu, H Zeng, DK Gifford
BMC bioinformatics 20, 1-14, 2019
232019
Computational counterselection identifies nonspecific therapeutic biologic candidates
SD Saksena, G Liu, C Banholzer, G Horny, S Ewert, DK Gifford
Cell Reports Methods 2 (7), 2022
112022
Machine learning based antibody design
DK Gifford, H Zeng, G Liu
US Patent App. 16/171,596, 2019
102019
Visualizing feature maps in deep neural networks using deepresolve. a genomics case study
G Liu, D Gifford
Proceedings of the International Conference on Machine Learning—Workshop on …, 2017
102017
A pan-variant mRNA-LNP T cell vaccine protects HLA transgenic mice from mortality after infection with SARS-CoV-2 Beta
B Carter, P Huang, G Liu, Y Liang, PJC Lin, BH Peng, LGA McKay, ...
Frontiers in immunology 14, 1135815, 2023
62023
Maximum n-times Coverage for Vaccine Design
G Liu, A Dimitrakakis, B Carter, D Gifford
International Conference on Learning Representations (ICLR 2022), 2021
52021
Bridging Recommendation and Marketing via Recurrent Intensity Modeling
Y Ma, G Liu, A Deoras
International Conference on Learning Representations (ICLR 2022), 2021
32021
Data Efficient Training for Reinforcement Learning with Adaptive Behavior Policy Sharing
G Liu, R Wu, HT Cheng, J Wang, J Ooi, L Li, A Li, WLS Li, C Boutilier, ...
Deep Reinforcement Learning workshop at NeurIPS, 2019, 2020
32020
Information Condensing Active Learning
S Jain, G Liu, D Gifford
arXiv preprint arXiv:2002.07916, 2020
22020
Beyond predictive modeling: new computational aspects for deep learning based biological applications
G Liu
Massachusetts Institute of Technology, 2020
22020
Sequence-graph duality: Unifying user modeling with self-attention for sequential recommendation
Z Shui, G Liu, A Deoras, G Karypis
New Frontiers in Graph Learning Workshop, NeurIPS 2022, 2022
12022
Experimental Design for Active Transductive Inference in Large Language Models
S Mukherjee, G Liu, A Deshmukh, A Lalitha, Y Ma, B Kveton
arXiv preprint arXiv:2404.08846, 2024
2024
Pessimistic Off-Policy Multi-Objective Optimization
S Alizadeh, A Bhargava, K Gopalswamy, L Jain, B Kveton, G Liu
27th International Conference on Artificial Intelligence and Statistics …, 2023
2023
Recurrent Intensity Modeling for User Recommendation and Online Matching
Y Ma, G Liu, A Deoras
Time Series Workshop at ICML, 2021, 2021
2021
Predicted Cellular Immunity Population Coverage Gaps for SARS-CoV-2 Subunit Vaccines and their Augmentation by Compact Joint Sets
G Liu, B Carter, DK Gifford
bioRxiv, 2020.08. 04.200691, 2020
2020
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